Description

The tomato is the edible berry of the plant Solanum lycopersicum, commonly known as the tomato plant. The species originated in western South America, Mexico, and Central America. The Nahuatl word tomatl gave rise to the Spanish word tomate, from which the English word tomato derived. Its domestication and use as a cultivated food may have originated with the indigenous peoples of Mexico. The Aztecs used tomatoes in their cooking at the time of the Spanish conquest of the Aztec Empire, and after the Spanish encountered the tomato for the first time after their contact with the Aztecs, they brought the plant to Europe, in a widespread transfer of plants known as the Columbian exchange. From there, the tomato was introduced to other parts of the European-colonized world during the 16th century.

Tomatoes are a significant source of umami flavor. They are consumed in diverse ways: raw or cooked, and in many dishes, sauces, salads, and drinks. While tomatoes are fruits—botanically classified as berries—they are commonly used culinarily as a vegetable ingredient or side dish.

Numerous varieties of the tomato plant are widely grown in temperate climates across the world, with greenhouses allowing for the production of tomatoes throughout all seasons of the year. Tomato plants typically grow to 1–3 meters (3–10 ft) in height. They are vines that have a weak stem that sprawls and typically needs support. Indeterminate tomato plants are perennials in their native habitat, but are cultivated as annuals. (Determinate, or bush, plants are annuals that stop growing at a certain height and produce a crop all at once.) The size of the tomato varies according to the cultivar, with a range of 1–10 cm (1⁄2–4 in) in width.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum lycopersicum

• Solanum lycopersicum 'Heinz 1706 (cultivar)' SL5.0
• Solanum lycopersicum 'I-3 (cultivar)' ASM295403v1
• Solanum lycopersicum 'Micro-Tom (cultivar)' SLYMIC
• Solanum lycopersicum var. cerasiforme (cherry tomato) 'LA1673 (cultivar)' SLYcer_r1.1
• Solanum lycopersicum 'Heniz1706 (cultivar)' ASM2240511v1
• Solanum lycopersicum var. cerasiforme (cherry tomato) 'BGV008108 (cultivar)' ASM2575967v1
• Solanum lycopersicum var. cerasiforme (cherry tomato) 'BGV008042 (cultivar)' ASM2575968v1
• Solanum lycopersicum var. cerasiforme (cherry tomato) 'BGV006768 (cultivar)' ASM2575969v1
• Solanum lycopersicum var. cerasiforme (cherry tomato) 'BGV006232 (cultivar)' ASM2575979v1
• Solanum lycopersicum 'EA00488 (cultivar)' ASM2575983v1
• Solanum lycopersicum var. cerasiforme (cherry tomato) 'BGV008189 (cultivar)' ASM2575984v1
• Solanum lycopersicum 'EA01640 (cultivar)' ASM2575985v1
• Solanum lycopersicum 'EA01049 (cultivar)' ASM2575992v1
• Solanum lycopersicum 'LA2706 (cultivar)' ASM2575996v1
• Solanum lycopersicum 'LA1090 (cultivar)' ASM2575999v1
• Solanum lycopersicum 'Fla.8059 (cultivar)' ASM2576002v1
• Solanum lycopersicum 'EA01037 (cultivar)' ASM2576003v1
• Solanum lycopersicum 'EA00940 (cultivar)' ASM2576006v1
• Solanum lycopersicum 'TR00023 (cultivar)' ASM2576007v1
• Solanum lycopersicum 'LYC3153 (cultivar)' ASM2576010v1
• Solanum lycopersicum 'M82 (cultivar)' ASM2770488v1
• Solanum lycopersicum var. cerasiforme (cherry tomato) 'ZY65 (cultivar)' ASM2770512v1
• Solanum lycopersicum 'Micro-Tom S9 (cultivar)' SLM_r1.2
• Solanum lycopersicum 'Fla. 8814 with a shortened I-3 introgression (cultivar)' ASM3046343v1
• Solanum lycopersicum 'Fla. 8814 with the Fusarium wilt resistance I-3 introgression (cultivar)' ASM3046346v1
• Solanum lycopersicum 'M82 (cultivar)' V100
• Solanum lycopersicum 'Moneyberg-TMV (cultivar)' MbTMVv1
• Solanum lycopersicum SolanumLycopersicum
• Solanum lycopersicum GWH 'Tao Lin'
• Solanum lycopersicum GWH 'PP'

S genes

Solanum lycopersicum 'Heinz 1706 (cultivar)' SL5.0 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	1	93364382	2216983-2215724	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	1	93364382	2738960-2737779	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	1	93364382	43356346-43355261	SL2.31ch01:40853100-40851001_SLF17Ψ	100	-
SLF1	1	93364382	46368379-46369548	NM_001301439.2, SLF1	100	F-box domain
S-RNase	1	93364382	47178015-47177776, 47177678-47177253	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	1	93364382	48064926-48063745	KJ814870.1, SLF2	100	-
SLF12Ψ	1	93364382	48121492-48122623	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	1	93364382	48188795-48187629	KJ814943.1, SLF4	100	-
SLF5Ψ	1	93364382	48269494-48268326	KJ814872.1, SLF5	100	-
SLF6Ψ	1	93364382	48287030-48285885	KJ814944.1, SLF6	100	-
SLF8Ψ	1	93364382	48844367-48843199	SL2.31ch01:46243000-46240701_SLF8Ψ	100	-
SLF7Ψ	1	93364382	48869148-48868051	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	1	93364382	51037284-51036220	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	1	93364382	51482478-51483709	KJ814899.1, SLF10	100	-
SLF11	1	93364382	53433949-53435121	KJ814877.1, SLF11	100	F-box associated
SLF12	1	93364382	55193039-55191876	NM_001301441.1, SLF12	100	F-box associated
SLF13	1	93364382	56038566-56037373	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	1	93364382	59249426-59248256	KJ814903.1, SLF14	100	-
SLF18	1	93364382	70407939-70409054	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	1	93364382	70426963-70425854	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'I-3 (cultivar)' ASM295403v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CP023757.1	98550989	2198651-2197392	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CP023757.1	98550989	2723566-2722385	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CP023757.1	98550989	45833995-45832910	SL2.31ch01:40853100-40851001_SLF17Ψ	100	-
SLF1	CP023757.1	98550989	50898155-50899324	NM_001301439.2, SLF1	100	F-box domain
S-RNase	CP023757.1	98550989	51703694-51703455, 51703357-51702932	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CP023757.1	98550989	52561737-52560556	KJ814870.1, SLF2	100	-
SLF12Ψ	CP023757.1	98550989	52618296-52619427	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CP023757.1	98550989	52686144-52684978	KJ814943.1, SLF4	100	-
SLF5Ψ	CP023757.1	98550989	52765807-52764639	KJ814872.1, SLF5	100	-
SLF6Ψ	CP023757.1	98550989	52783465-52782320	KJ814944.1, SLF6	100	-
SLF8Ψ	CP023757.1	98550989	53343840-53342672	SL2.31ch01:46243000-46240701_SLF8Ψ	100	-
SLF7Ψ	CP023757.1	98550989	53368621-53367524	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CP023757.1	98550989	55532020-55530956	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CP023757.1	98550989	55976657-55977888	KJ814899.1, SLF10	100	-
SLF11	CP023757.1	98550989	57935433-57936605	KJ814877.1, SLF11	100	F-box associated
SLF12	CP023757.1	98550989	59698204-59697041	NM_001301441.1, SLF12	100	F-box associated
SLF13	CP023757.1	98550989	60539206-60538013	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CP023757.1	98550989	63735166-63733996	KJ814903.1, SLF14	100	-
SLF18	CP023757.1	98550989	75351838-75352953	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CP023757.1	98550989	75369753-75370862	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'Micro-Tom (cultivar)' SLYMIC S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM022782.1	93364382	2216983-2215724	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM022782.1	93364382	2738960-2737779	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM022782.1	93364382	43356346-43355261	SL2.31ch01:40853100-40851001_SLF17Ψ	100	-
SLF1	CM022782.1	93364382	46368379-46369548	NM_001301439.2, SLF1	100	F-box domain
S-RNase	CM022782.1	93364382	47178015-47177776 47177678-47177253	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CM022782.1	93364382	48064926-48063745	KJ814870.1, SLF2	100	-
SLF12Ψ	CM022782.1	93364382	48121492-48122623	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM022782.1	93364382	48188795-48187629	KJ814943.1, SLF4	100	-
SLF5Ψ	CM022782.1	93364382	48269494-48268326	KJ814872.1, SLF5	100	-
SLF6Ψ	CM022782.1	93364382	48287030-48285885	KJ814944.1, SLF6	100	-
SLF8Ψ	CM022782.1	93364382	48844367-48843199	SL2.31ch01:46243000-46240701_SLF8Ψ	100	-
SLF7Ψ	CM022782.1	93364382	48869148-48868051	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM022782.1	93364382	51037284-51036220	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM022782.1	93364382	51482478-51483709	KJ814899.1, SLF10	100	-
SLF11	CM022782.1	93364382	53433949-53435121	KJ814877.1, SLF11	100	F-box associated
SLF12	CM022782.1	93364382	55193039-55191876	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM022782.1	93364382	56038566-56037373	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM022782.1	93364382	59249426-59248256	KJ814903.1, SLF14	100	-
SLF18	CM022782.1	93364382	70407939-70409054	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM022782.1	93364382	70426963-70425854	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'LA1673 (cultivar)' SLYcer_r1.1 S genes

Query	Contig	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF19	BMBW01000001.1	44614784	22967071-22965962	SL2.31ch01:67757501-67759600_SLF19	99.7	F-box domain
SLF18	BMBW01000001.1	44614784	22985066-22983957	SL2.31ch01:67739501-67741500_SLF18	99.1	F-box domain
SLF14Ψ	BMBW01000001.1	44614784	34381967-34383137	KJ814903.1, SLF14	99.8	-
SLF13	BMBW01000001.1	44614784	37815598-37816800	KJ814879.1, SLF13	100	F-box domain
SLF2	BMBW01000001.1	44614784	37815613-37816800	BK009231.1, SLF2	99.8	F-box domain
SLF12	BMBW01000001.1	44614784	38658630-38659793	KJ814878.1, SLF12	99.7	F-box domain
SLF11	BMBW01000001.1	44614784	40528472-40527300	KJ814877.1, SLF11	100	F-box associated
SLF10Ψ	BMBW01000001.1	44614784	42343447-42342216	KJ814876.1, SLF10	99.9	-
SLF9	BMBW01000001.1	44614784	42823668-42824732	NM_001329461.2, SLF9	99	F-box domain
SLF16	BMBW01000003.1	35228137	32458658-32459839	SL2.31ch01:2723400-2721301_SLF16	99.8	F-box domain
SLF15Ψ	BMBW01000003.1	35228137	32995985-32997243	SL2.31ch01:2198500-2196501_SLF15	99.4	-
SLF23	BMBW01000063.1	3934301	2335982-2334825	KU960927.1, SLF23	99.4	F-box domain
SLF21	BMBW01000063.1	3934301	2643784-2645085	KU960918.1, SLF21	98	F-box domain
SLF7Ψ	BMBW01000063.1	3934301	3020725-3021894	KJ814874.1, SLF7	99.6	-
SLF1Ψ	BMBW01000063.1	3934301	3813675-3812506	KJ814869.1, SLF1	99.4	-
SLF17	BMBW01000086.1	3934301	1190713-1189628	SL2.31ch01:40853100-40851001_SLF17Ψ	98.6	F-box domain

Solanum lycopersicum 'Heniz 1706 (cultivar)' ASM2240511v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM039652.1	91866112	2144101-2142842	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM039652.1	91866112	2666068-2664887	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM039652.1	91866112	41862564-41861479	SL2.31ch01:40853100-40851001_SLF17Ψ	100	-
SLF1	CM039652.1	91866112	44862998-44864167	NM_001301439.2, SLF1	100	F-box domain
S-RNase	CM039652.1	91866112	45672592-45672353 45672255-45671830	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CM039652.1	91866112	46559497-46558316	KJ814870.1, SLF2	100	-
SLF12Ψ	CM039652.1	91866112	46616065-46617196	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM039652.1	91866112	46683367-46682201	KJ814943.1, SLF4	100	-
SLF5Ψ	CM039652.1	91866112	46764066-46762898	KJ814872.1, SLF5	100	-
SLF6Ψ	CM039652.1	91866112	46781602-46780457	KJ814944.1, SLF6	100	-
SLF8Ψ	CM039652.1	91866112	47338932-47337764	SL2.31ch01:46243000-46240701_SLF8Ψ	100	-
SLF7Ψ	CM039652.1	91866112	47363711-47362614	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM039652.1	91866112	49531820-49530756	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM039652.1	91866112	49977014-49978245	KJ814899.1, SLF10	100	-
SLF11	CM039652.1	91866112	51928457-51929629	KJ814877.1, SLF11	100	F-box associated
SLF12	CM039652.1	91866112	53687508-53686345	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM039652.1	91866112	54533010-54531817	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM039652.1	91866112	57743756-57742586	KJ814903.1, SLF14	100	-
SLF18	CM039652.1	91866112	68901807-68902922	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM039652.1	91866112	68920831-68919722	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum var. cerasiforme (cherry tomato) 'BGV008108 (cultivar)' ASM2575967v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047153.1	92414615	2149655-2148396	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM047153.1	92414615	2669846-2668665	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047153.1	92414615	42963876-42962791	SL2.31ch01:40853100-40851001_SLF17Ψ	99.8	-
SLF1	CM047153.1	92414615	45893544-45894713	NM_001301439.2, SLF1	99.8	F-box domain
S-RNase	CM047153.1	92414615	46703272-46703033 46702935-46702510	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CM047153.1	92414615	47592262-47591081	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047153.1	92414615	47648791-47649922	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047153.1	92414615	47715941-47714775	KJ814943.1, SLF4	100	-
SLF5Ψ	CM047153.1	92414615	47796592-47795424	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047153.1	92414615	47814114-47812969	KJ814944.1, SLF6	99.9	-
SLF8Ψ	CM047153.1	92414615	48339549-48338381	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	CM047153.1	92414615	48364314-48363217	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047153.1	92414615	50558839-50557775	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM047153.1	92414615	51004436-51005667	KJ814899.1, SLF10	99.9	-
SLF11	CM047153.1	92414615	52944681-52945853	KJ814877.1, SLF11	99.9	F-box associated
SLF12	CM047153.1	92414615	54714986-54713823	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047153.1	92414615	55566127-55564934	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047153.1	92414615	58588024-58586854	KJ814903.1, SLF14	100	-
SLF18	CM047153.1	92414615	69723851-69724966	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047153.1	92414615	69742881-69741772	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum var. cerasiforme (cherry tomato) 'BGV008042 (cultivar)' ASM2575968v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047129.1	89432989	2146865-2145606	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM047129.1	89432989	2666802-2665621	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047129.1	89432989	40332490-40331405	SL2.31ch01:40853100-40851001_SLF17Ψ	99.9	-
SLF1	CM047129.1	89432989	43197444-43198613	NM_001301439.2, SLF1	99.7	F-box domain
S-RNase	CM047129.1	89432989	44005786-44005547 44005449-44005024	XM_004229015.1, Ribonuclease S-3	99.8	Ribonuclease T2 family
SLF2Ψ	CM047129.1	89432989	44880644-44879463	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047129.1	89432989	44937178-44938309	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047129.1	89432989	45004303-45003137	KJ814943.1, SLF4	99.9	-
SLF5Ψ	CM047129.1	89432989	45084957-45083789	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047129.1	89432989	45102395-45101250	KJ814944.1, SLF6	99.9	-
SLF8Ψ	CM047129.1	89432989	45659208-45658040	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	CM047129.1	89432989	45683973-45682876	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047129.1	89432989	47877770-47876706	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM047129.1	89432989	48321776-48323007	KJ814899.1, SLF10	99.9	-
SLF11	CM047129.1	89432989	50271433-50272605	KJ814877.1, SLF11	100	F-box associated
SLF12	CM047129.1	89432989	52040311-52039148	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047129.1	89432989	52857379-52856186	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047129.1	89432989	55699033-55697863	KJ814903.1, SLF14	100	-
SLF18	CM047129.1	89432989	66724127-66725242	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047129.1	89432989	66743152-66742043	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum var. cerasiforme (cherry tomato) 'BGV006768 (cultivar)' ASM2575969v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047141.1	93230762	2174751-2173492	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM047141.1	93230762	2694966-2693785	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047141.1	93230762	43342316-43341231	SL2.31ch01:40853100-40851001_SLF17Ψ	99.8	-
SLF1	CM047141.1	93230762	46307370-46308539	NM_001301439.2, SLF1	99.8	F-box domain
S-RNase	CM047141.1	93230762	47117358-47117119 47117021-47116596	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CM047141.1	93230762	48011613-48010432	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047141.1	93230762	48068152-48069283	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047141.1	93230762	48135445-48134279	KJ814943.1, SLF4	100	-
SLF5Ψ	CM047141.1	93230762	48216139-48214971	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047141.1	93230762	48233665-48232520	KJ814944.1, SLF6	99.9	-
SLF8Ψ	CM047141.1	93230762	48791118-48789950	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	CM047141.1	93230762	48815884-48814787	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047141.1	93230762	51011268-51010204	NM_001329461.2, SLF9	99.8	F-box domain
SLF10Ψ	CM047141.1	93230762	51457215-51458446	KJ814899.1, SLF10	99.9	-
SLF11	CM047141.1	93230762	53398510-53399682	KJ814877.1, SLF11	100	F-box associated
SLF12	CM047141.1	93230762	55169866-55168703	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047141.1	93230762	56021602-56020409	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047141.1	93230762	59232113-59230943	KJ814903.1, SLF14	100	-
SLF18	CM047141.1	93230762	70312757-70313872	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047141.1	93230762	70331783-70330674	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum var. cerasiforme (cherry tomato) 'BGV006232 (cultivar)' ASM2575979v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047117.1	92999898	2148680-2147421	SL2.31ch01:2198500-2196501_SLF15	99.7	F-box domain
SLF16	CM047117.1	92999898	2696172-2694991	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047117.1	92999898	43273445-43272360	SL2.31ch01:40853100-40851001_SLF17Ψ	99.8	-
SLF1	CM047117.1	92999898	46276910-46278079	NM_001301439.2, SLF1	99.8	F-box domain
S-RNase	CM047117.1	92999898	47086960-47086721 47086623-47086198	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CM047117.1	92999898	47980864-47979683	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047117.1	92999898	48037415-48038546	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047117.1	92999898	48104707-48103541	KJ814943.1, SLF4	100	-
SLF5Ψ	CM047117.1	92999898	48185411-48184243	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047117.1	92999898	48202936-48201791	KJ814944.1, SLF6	99.9	-
SLF8Ψ	CM047117.1	92999898	48760246-48759078	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	CM047117.1	92999898	48785013-48783916	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047117.1	92999898	50979918-50978854	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM047117.1	92999898	51425856-51427087	KJ814899.1, SLF10	99.9	-
SLF11	CM047117.1	92999898	53366885-53368057	KJ814877.1, SLF11	100	F-box associated
SLF12	CM047117.1	92999898	55138330-55137167	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047117.1	92999898	55989927-55988734	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047117.1	92999898	59199609-59198439	KJ814903.1, SLF14	100	-
SLF18	CM047117.1	92999898	70121287-70122402	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047117.1	92999898	70140313-70139204	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'EA00488 (cultivar)' ASM2575983v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047177.1	89859164	2151458-2150199	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM047177.1	89859164	2673034-2671853	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047177.1	89859164	40526121-40525036	SL2.31ch01:40853100-40851001_SLF17Ψ	100	-
SLF1	CM047177.1	89859164	43377551-43378720	NM_001301439.2, SLF1	100	F-box domain
S-RNase	CM047177.1	89859164	44167109-44166870 44166772-44166347	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CM047177.1	89859164	45035895-45034714	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047177.1	89859164	45092431-45093562	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047177.1	89859164	45159657-45158491	KJ814943.1, SLF4	100	-
SLF5Ψ	CM047177.1	89859164	45240187-45239019	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047177.1	89859164	45257658-45256513	KJ814944.1, SLF6	100	-
SLF8Ψ	CM047177.1	89859164	45814368-45813200	SL2.31ch01:46243000-46240701_SLF8Ψ	100	-
SLF7Ψ	CM047177.1	89859164	45839147-45838050	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047177.1	89859164	48005530-48004466	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM047177.1	89859164	48450533-48451764	KJ814899.1, SLF10	100	-
SLF11	CM047177.1	89859164	50400517-50401689	KJ814877.1, SLF11	100	F-box associated
SLF12	CM047177.1	89859164	52158209-52157046	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047177.1	89859164	53002711-53001518	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047177.1	89859164	56010344-56009174	KJ814903.1, SLF14	100	-
SLF18	CM047177.1	89859164	67140288-67141403	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047177.1	89859164	67159312-67158203	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum var. cerasiforme (cherry tomato) 'BGV008189 (cultivar)' ASM2575984v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047165.1	90981151	2158832-2157573	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM047165.1	90981151	2680372-2679191	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047165.1	90981151	41255125-41254040	SL2.31ch01:40853100-40851001_SLF17Ψ	99.8	-
SLF1	CM047165.1	90981151	44129576-44130745	NM_001301439.2, SLF1	99.8	F-box domain
S-RNase	CM047165.1	90981151	44938723-44938484 44938386-44937961	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CM047165.1	90981151	45810059-45808878	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047165.1	90981151	45866591-45867722	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047165.1	90981151	45933855-45932689	KJ814943.1, SLF4	100	-
SLF5Ψ	CM047165.1	90981151	46014497-46013329	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047165.1	90981151	46032006-46030861	KJ814944.1, SLF6	99.9	-
SLF8Ψ	CM047165.1	90981151	46588984-46587816	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	CM047165.1	90981151	46613751-46612654	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047165.1	90981151	48807717-48806653	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM047165.1	90981151	49253381-49254612	KJ814899.1, SLF10	99.9	-
SLF11	CM047165.1	90981151	51193717-51194889	KJ814877.1, SLF11	100	F-box associated
SLF12	CM047165.1	90981151	52964606-52963443	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047165.1	90981151	53815814-53814621	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047165.1	90981151	57014250-57013080	KJ814903.1, SLF14	100	-
SLF18	CM047165.1	90981151	68143161-68144276	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047165.1	90981151	68162187-68161078	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'EA01640 (cultivar)' ASM2575985v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047237.1	90460582	2161690-2160431	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM047237.1	90460582	2682649-2681468	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047237.1	90460582	40907430-40906345	SL2.31ch01:40853100-40851001_SLF17Ψ	100	-
SLF1	CM047237.1	90460582	43840901-43842070	NM_001301439.2, SLF1	100	F-box domain
S-RNase	CM047237.1	90460582	44650435-44650196 44650098-44649673	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CM047237.1	90460582	45537182-45536001	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047237.1	90460582	45593730-45594861	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047237.1	90460582	45661014-45659848	KJ814943.1, SLF4	100	-
SLF5Ψ	CM047237.1	90460582	45741710-45740542	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047237.1	90460582	45759229-45758084	KJ814944.1, SLF6	100	-
SLF8Ψ	CM047237.1	90460582	46316495-46315327	SL2.31ch01:46243000-46240701_SLF8Ψ	100	-
SLF7Ψ	CM047237.1	90460582	46341276-46340179	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047237.1	90460582	48509125-48508061	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM047237.1	90460582	48954292-48955523	KJ814899.1, SLF10	100	-
SLF11	CM047237.1	90460582	50905409-50906581	KJ814877.1, SLF11	100	F-box associated
SLF12	CM047237.1	90460582	52664087-52662924	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047237.1	90460582	53509318-53508125	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047237.1	90460582	56667477-56666307	KJ814903.1, SLF14	100	-
SLF18	CM047237.1	90460582	67695720-67696835	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047237.1	90460582	67714744-67713635	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'EA01049 (cultivar)' ASM2575992v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047213.1	91203358	2170272-2169013	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM047213.1	91203358	2693079-2691898	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047213.1	91203358	41633850-41632765	SL2.31ch01:40853100-40851001_SLF17Ψ	100	-
SLF1	CM047213.1	91203358	44549063-44550232	NM_001301439.2, SLF1	100	F-box domain
S-RNase	CM047213.1	91203358	45343896-45343657 45343559-45343134	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CM047213.1	91203358	46217642-46216461	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047213.1	91203358	46274172-46275303	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047213.1	91203358	46341370-46340204	KJ814943.1, SLF4	100	-
SLF5Ψ	CM047213.1	91203358	46421863-46420695	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047213.1	91203358	46439307-46438162	KJ814944.1, SLF6	100	-
SLF8Ψ	CM047213.1	91203358	46995574-46994406	SL2.31ch01:46243000-46240701_SLF8Ψ	100	-
SLF7Ψ	CM047213.1	91203358	47020326-47019229	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047213.1	91203358	49185340-49184276	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM047213.1	91203358	49630019-49631250	KJ814899.1, SLF10	100	-
SLF11	CM047213.1	91203358	51579213-51580385	KJ814877.1, SLF11	100	F-box associated
SLF12	CM047213.1	91203358	53336012-53334849	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047213.1	91203358	54179809-54178616	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047213.1	91203358	57195929-57194759	KJ814903.1, SLF14	100	-
SLF18	CM047213.1	91203358	68361744-68362859	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047213.1	91203358	68380765-68379656	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'LA2706 (cultivar)' ASM2575996v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047261.1	92480996	2170284-2169025	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM047261.1	92480996	2691941-2690760	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047261.1	92480996	42896236-42895151	SL2.31ch01:40853100-40851001_SLF17Ψ	99.8	-
SLF1	CM047261.1	92480996	45796607-45797776	NM_001301439.2, SLF1	99.8	F-box domain
S-RNase	CM047261.1	92480996	46606205-46605966 46605868-46605443	XM_004229015.1, Ribonuclease S-3	99.8	Ribonuclease T2 family
SLF2Ψ	CM047261.1	92480996	47489304-47488123	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047261.1	92480996	47545834-47546965	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047261.1	92480996	47612988-47611822	KJ814943.1, SLF4	100	-
SLF5Ψ	CM047261.1	92480996	47693607-47692439	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047261.1	92480996	47711104-47709959	KJ814944.1, SLF6	99.9	-
SLF8Ψ	CM047261.1	92480996	48264551-48263383	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	CM047261.1	92480996	48289317-48288220	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047261.1	92480996	50490584-50489520	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM047261.1	92480996	50936411-50937642	KJ814899.1, SLF10	99.9	-
SLF11	CM047261.1	92480996	52876352-52877524	KJ814877.1, SLF11	100	F-box associated
SLF12	CM047261.1	92480996	54647042-54645879	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047261.1	92480996	55516377-55515184	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047261.1	92480996	58498392-58497222	KJ814903.1, SLF14	100	-
SLF18	CM047261.1	92480996	69631761-69632876	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047261.1	92480996	69650786-69649677	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'LA1090 (cultivar)' ASM2575999v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047249.1	90765275	2178547-2177288	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM047249.1	90765275	2699360-2698179	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047249.1	90765275	41392674-41391589	SL2.31ch01:40853100-40851001_SLF17Ψ	99.9	-
SLF1	CM047249.1	90765275	44290610-44291779	NM_001301439.2, SLF1	99.9	F-box domain
S-RNase	CM047249.1	90765275	45099582-45099343 45099245-45098820	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CM047249.1	90765275	45975566-45974385	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047249.1	90765275	46032099-46033230	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047249.1	90765275	46099317-46098151	KJ814943.1, SLF4	100	-
SLF5Ψ	CM047249.1	90765275	46179878-46178710	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047249.1	90765275	46197374-46196229	KJ814944.1, SLF6	100	-
SLF8Ψ	CM047249.1	90765275	46746420-46745252	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	CM047249.1	90765275	46771193-46770096	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047249.1	90765275	48938061-48936997	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM047249.1	90765275	49383117-49384348	KJ814899.1, SLF10	100	-
SLF11	CM047249.1	90765275	51333403-51334575	KJ814877.1, SLF11	100	F-box associated
SLF12	CM047249.1	90765275	53091598-53090435	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047249.1	90765275	53936500-53935307	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047249.1	90765275	56853015-56851845	KJ814903.1, SLF14	100	-
SLF18	CM047249.1	90765275	67984580-67985695	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047249.1	90765275	68003605-68002496	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'Fla.8059 (cultivar)' ASM2576002v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047225.1	91746556	2143399-2142140	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM047225.1	91746556	2663408-2662227	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047225.1	91746556	42470948-42469866	SL2.31ch01:40853100-40851001_SLF17Ψ	98.7	-
SLF1	CM047225.1	91746556	45395035-45396204	NM_001301439.2, SLF1	99.9	F-box domain
S-RNase Ψ	CM047225.1	91746556	46190233-46189995 46189897-46189472	XM_004229015.1, Ribonuclease S-3	97.6	-
SLF2Ψ	CM047225.1	91746556	47076218-47075037	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047225.1	91746556	47132750-47133881	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047225.1	91746556	47199967-47198801	KJ814943.1, SLF4	100	-
SLF5Ψ	CM047225.1	91746556	47280518-47279350	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047225.1	91746556	47298020-47296875	KJ814944.1, SLF6	100	-
SLF8Ψ	CM047225.1	91746556	47854945-47853777	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	CM047225.1	91746556	47879719-47878622	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047225.1	91746556	50046084-50045020	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM047225.1	91746556	50491058-50492289	KJ814899.1, SLF10	100	-
SLF11	CM047225.1	91746556	52441035-52442207	KJ814877.1, SLF11	100	F-box associated
SLF12	CM047225.1	91746556	54198851-54197688	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047225.1	91746556	55043341-55042148	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047225.1	91746556	58050093-58048923	KJ814903.1, SLF14	100	-
SLF18	CM047225.1	91746556	68903356-68904471	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047225.1	91746556	68922376-68921267	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'EA01037 (cultivar)' ASM2576003v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047201.1	91097588	2160592-2159333	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM047201.1	91097588	2680578-2679397	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047201.1	91097588	41590968-41589883	SL2.31ch01:40853100-40851001_SLF17Ψ	99.8	-
SLF1	CM047201.1	91097588	44480471-44481640	NM_001301439.2, SLF1	99.9	F-box domain
S-RNase	CM047201.1	91097588	45260193-45259954 45259856-45259431	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CM047201.1	91097588	46135813-46134632	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047201.1	91097588	46192348-46193479	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047201.1	91097588	46259531-46258365	KJ814943.1, SLF4	100	-
SLF5Ψ	CM047201.1	91097588	46340116-46338948	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047201.1	91097588	46357620-46356475	KJ814944.1, SLF6	100	-
SLF8Ψ	CM047201.1	91097588	46914547-46913379	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	CM047201.1	91097588	46939327-46938230	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047201.1	91097588	49106132-49105068	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM047201.1	91097588	49551041-49552272	KJ814899.1, SLF10	100	-
SLF11	CM047201.1	91097588	51501080-51502252	KJ814877.1, SLF11	100	F-box associated
SLF12	CM047201.1	91097588	53258987-53257824	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047201.1	91097588	54103689-54102496	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047201.1	91097588	57116879-57115709	KJ814903.1, SLF14	100	-
SLF18	CM047201.1	91097588	68290472-68291587	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047201.1	91097588	68309488-68308379	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'EA00940 (cultivar)' ASM2576006v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047189.1	92342321	2171699-2170440	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM047189.1	92342321	2692576-2691395	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047189.1	92342321	42906145-42905060	SL2.31ch01:40853100-40851001_SLF17Ψ	100	-
SLF1	CM047189.1	92342321	45799766-45800935	NM_001301439.2, SLF1	99.9	F-box domain
S-RNase	CM047189.1	92342321	46608906-46608667 46608569-46608144	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CM047189.1	92342321	47456069-47454888	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047189.1	92342321	47512603-47513734	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047189.1	92342321	47579859-47578693	KJ814943.1, SLF4	100	-
SLF5Ψ	CM047189.1	92342321	47660477-47659309	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047189.1	92342321	47677987-47676842	KJ814944.1, SLF6	100	-
SLF8Ψ	CM047189.1	92342321	48235153-48233985	SL2.31ch01:46243000-46240701_SLF8Ψ	100	-
SLF7Ψ	CM047189.1	92342321	48259937-48258840	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047189.1	92342321	50426630-50425566	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM047189.1	92342321	50871714-50872945	KJ814899.1, SLF10	100	-
SLF11	CM047189.1	92342321	52821994-52823166	KJ814877.1, SLF11	100	F-box associated
SLF12	CM047189.1	92342321	54580123-54578960	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047189.1	92342321	55411242-55410049	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047189.1	92342321	58556688-58555518	KJ814903.1, SLF14	100	-
SLF18	CM047189.1	92342321	69500713-69501828	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047189.1	92342321	69519726-69518617	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'TR00023 (cultivar)' ASM2576007v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047285.1	92577493	2150253-2148994	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM047285.1	92577493	2671714-2670533	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047285.1	92577493	43421824-43420739	SL2.31ch01:40853100-40851001_SLF17Ψ	99.9	-
SLF1	CM047285.1	92577493	46342502-46343671	NM_001301439.2, SLF1	99.9	F-box domain
S-RNase	CM047285.1	92577493	47141132-47140893 47140795-47140370	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CM047285.1	92577493	48008582-48007401	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047285.1	92577493	48065125-48066256	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047285.1	92577493	48132382-48131216	KJ814943.1, SLF4	100	-
SLF5Ψ	CM047285.1	92577493	48213007-48211839	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047285.1	92577493	48230527-48229382	KJ814944.1, SLF6	100	-
SLF8Ψ	CM047285.1	92577493	48787479-48786311	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	CM047285.1	92577493	48812259-48811162	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047285.1	92577493	50979005-50977941	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM047285.1	92577493	51423981-51425212	KJ814899.1, SLF10	100	-
SLF11	CM047285.1	92577493	53374080-53375252	KJ814877.1, SLF11	100	F-box associated
SLF12	CM047285.1	92577493	55131878-55130715	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047285.1	92577493	55976564-55975371	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047285.1	92577493	58875844-58874674	KJ814903.1, SLF14	100	-
SLF18	CM047285.1	92577493	69729607-69730722	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047285.1	92577493	69748627-69747518	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'LYC3153 (cultivar)' ASM2576010v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM047273.1	92318031	2160691-2159432	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CM047273.1	92318031	2682188-2681007	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	CM047273.1	92318031	42870116-42869031	SL2.31ch01:40853100-40851001_SLF17Ψ	99.9	-
SLF1	CM047273.1	92318031	45719450-45720619	NM_001301439.2, SLF1	99.8	F-box domain
S-RNase	CM047273.1	92318031	46527982-4652774 46527645-46527220	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	CM047273.1	92318031	47400613-47399432	KJ814870.1, SLF2	100	-
SLF12Ψ	CM047273.1	92318031	47457147-47458278	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	CM047273.1	92318031	47524408-47523242	KJ814943.1, SLF4	100	-
SLF5Ψ	CM047273.1	92318031	47605073-47603905	KJ814872.1, SLF5	100	-
SLF6Ψ	CM047273.1	92318031	47622552-47621407	KJ814944.1, SLF6	100	-
SLF8Ψ	CM047273.1	92318031	48179538-48178370	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	CM047273.1	92318031	48204317-48203220	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	CM047273.1	92318031	50397996-50396932	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	CM047273.1	92318031	50843761-50844992	KJ814899.1, SLF10	100	-
SLF11	CM047273.1	92318031	52784090-52785262	KJ814877.1, SLF11	100	F-box associated
SLF12	CM047273.1	92318031	54554676-54553513	NM_001301441.1, SLF12	100	F-box associated
SLF13	CM047273.1	92318031	55405648-55404455	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	CM047273.1	92318031	58414803-58413633	KJ814903.1, SLF14	100	-
SLF18	CM047273.1	92318031	69518349-69519464	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	CM047273.1	92318031	69537371-69536262	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'M82 (cultivar)' ASM2770488v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	JALGYV01 0005145.1	81465427	2239093-2237834	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	JALGYV01 0005145.1	81465427	2763360-2762179	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	JALGYV01 0005145.1	81465427	35184227-35183142	SL2.31ch01:40853100-40851001_SLF17Ψ	100	-
SLF1	JALGYV01 0005145.1	81465427	37706188-37707357	NM_001301439.2, SLF1	100	F-box domain
S-RNase	JALGYV01 0005145.1	81465427	38318180-38317941, 38317843-38317418	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	JALGYV01 0005145.1	81465427	38787133-38785952	KJ814870.1, SLF2	100	-
SLF12Ψ	JALGYV01 0005145.1	81465427	38843710-38844841	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	JALGYV01 0005145.1	81465427	38911008-38909842	KJ814943.1, SLF4	100	-
SLF5Ψ	JALGYV01 0005145.1	81465427	38991724-38990556	KJ814872.1, SLF5	100	-
SLF6Ψ	JALGYV01 0005145.1	81465427	39009259-39008114	KJ814944.1, SLF6	100	-
SLF8Ψ	JALGYV01 0005145.1	81465427	39566604-39565436	SL2.31ch01:46243000-46240701_SLF8Ψ	100	-
SLF7Ψ	JALGYV01 0005145.1	81465427	39591376-39590279	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	JALGYV01 0005145.1	81465427	41756801-41755737	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	JALGYV01 0005145.1	81465427	42199796-42201027	KJ814899.1, SLF10	100	-
SLF11	JALGYV01 0005145.1	81465427	44144229-44145401	KJ814877.1, SLF11	100	F-box associated
SLF12	JALGYV01 0005145.1	81465427	45897944-45896781	NM_001301441.1, SLF12	100	F-box associated
SLF13	JALGYV01 0005145.1	81465427	46621357-46620164	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	JALGYV01 0005145.1	81465427	49503017-49501847	KJ814903.1, SLF14	100	-
SLF18	JALGYV01 0005145.1	81465427	59494816-59495931	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	JALGYV01 0005145.1	81465427	59513833-59512724	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum var. cerasiforme (cherry tomato) 'ZY65 (cultivar)' ASM2770512v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	JALGYU01 0000318.1	89983042	2143976-2142717	SL2.31ch01:2198500-2196501_SLF15	99.8	F-box domain
SLF16	JALGYU01 0000318.1	89983042	2673210-2672029	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	JALGYU01 0000318.1	89983042	41098243-41097158	SL2.31ch01:40853100-40851001_SLF17Ψ	99.9	-
SLF1	JALGYU01 0000318.1	89983042	43942054-43943223	NM_001301439.2, SLF1	99.8	F-box domain
S-RNase	JALGYU01 0000318.1	89983042	44751111-44750872 44750774-44750349	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	JALGYU01 0000318.1	89983042	45627679-45626498	KJ814870.1, SLF2	100	-
SLF12Ψ	JALGYU01 0000318.1	89983042	45684241-45685372	SL2.31ch01:45516501-45518600_SLF12Ψ	99.9	-
SLF4Ψ	JALGYU01 0000318.1	89983042	45751544-45750378	KJ814943.1, SLF4	100	-
SLF5Ψ	JALGYU01 0000318.1	89983042	45832209-45831041	KJ814872.1, SLF5	100	-
SLF6Ψ	JALGYU01 0000318.1	89983042	45849744-45848599	KJ814944.1, SLF6	99.9	-
SLF8Ψ	JALGYU01 0000318.1	89983042	46407094-46405926	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	JALGYU01 0000318.1	89983042	46431873-46430776	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	JALGYU01 0000318.1	89983042	48617004-48615940	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	JALGYU01 0000318.1	89983042	49062969-49064200	KJ814899.1, SLF10	99.8	-
SLF11	JALGYU01 0000318.1	89983042	51013941-51015113	KJ814877.1, SLF11	100	F-box associated
SLF12	JALGYU01 0000318.1	89983042	52787154-52785991	NM_001301441.1, SLF12	100	F-box associated
SLF13	JALGYU01 0000318.1	89983042	53639114-53637921	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	JALGYU01 0000318.1	89983042	56373065-56371895	KJ814903.1, SLF14	100	-
SLF18	JALGYU01 0000318.1	89983042	67518937-67520052	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	JALGYU01 0000318.1	89983042	67537963-67536854	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'Micro-Tom S9 (cultivar)' SLM_r1.2 S genes

Query	Scaffold	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	BSVZ01 000001.1	92770581	2179674-2178415	SL2.31ch01:2198500-2196501_SLF15	99.4	F-box domain
SLF16	BSVZ01 000001.1	92770581	2739788-2738607	SL2.31ch01:2723400-2721301_SLF16	99.8	F-box domain
SLF17Ψ	BSVZ01 000001.1	92770581	43287154-43286069	SL2.31ch01:40853100-40851001_SLF17Ψ	99.8	-
SLF1	BSVZ01 000001.1	92770581	46202212-46203381	NM_001301439.2, SLF1	99.8	F-box domain
S-RNase	BSVZ01 000001.1	92770581	47009431-47009192 47009094-47008669	XM_004229015.1, Ribonuclease S-3	99.8	Ribonuclease T2 family
SLF2Ψ	BSVZ01 000001.1	92770581	47873181-47872000	KJ814870.1, SLF2	100	-
SLF12Ψ	BSVZ01 000001.1	92770581	47929715-47930846	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	BSVZ01 000001.1	92770581	47996993-47995827	KJ814943.1, SLF4	100	-
SLF5Ψ	BSVZ01 000001.1	92770581	48076566-48075398	KJ814872.1, SLF5	100	-
SLF6Ψ	BSVZ01 000001.1	92770581	48093605-48092460	KJ814944.1, SLF6	99.9	-
SLF8Ψ	BSVZ01 000001.1	92770581	48651817-48650649	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	BSVZ01 000001.1	92770581	48676588-48675491	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	BSVZ01 000001.1	92770581	50871803-50870739	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	BSVZ01 000001.1	92770581	51327522-51328753	KJ814899.1, SLF10	99.9	-
SLF11	BSVZ01 000001.1	92770581	53267369-53268541	KJ814877.1, SLF11	100	F-box associated
SLF12	BSVZ01 000001.1	92770581	55032078-55030915	NM_001301441.1, SLF12	100	F-box associated
SLF13	BSVZ01 000001.1	92770581	55871046-55869853	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	BSVZ01 000001.1	92770581	58884942-58883772	KJ814903.1, SLF14	100	-
SLF18	BSVZ01 000001.1	92770581	69933527-69934642	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	BSVZ01 000001.1	92770581	69952552-69951443	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'Fla. 8814 with a shortened I-3 introgression (cultivar)' ASM3046343v1 S genes

Query	Contig	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF1	JAMKOG01 0000016.1	10239512	183113-184282	NM_001301439.2, SLF1	99.9	F-box domain
S-RNase	JAMKOG01 0000016.1	10239512	992722-992483 992385-991960	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	JAMKOG01 0000016.1	10239512	1879757-1878576	KJ814870.1, SLF2	100	-
SLF12Ψ	JAMKOG01 0000016.1	10239512	1936312-1937443	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	JAMKOG01 0000016.1	10239512	2003612-2002446	KJ814943.1, SLF4	100	-
SLF5Ψ	JAMKOG01 0000016.1	10239512	2084300-2083132	KJ814872.1, SLF5	100	-
SLF6Ψ	JAMKOG01 0000016.1	10239512	2101837-2100692	KJ814944.1, SLF6	100	-
SLF8Ψ	JAMKOG01 0000016.1	10239512	2659154-2657986	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	JAMKOG01 0000016.1	10239512	2683933-2682836	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	JAMKOG01 0000016.1	10239512	4851781-4850717	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	JAMKOG01 0000016.1	10239512	5296976-5298207	KJ814899.1, SLF10	100	-
SLF11	JAMKOG01 0000016.1	10239512	7248247-7249419	KJ814877.1, SLF11	100	F-box associated
SLF12	JAMKOG01 0000016.1	10239512	9007154-9005991	NM_001301441.1, SLF12	100	F-box associated
SLF13	JAMKOG01 0000016.1	10239512	9852645-9851452	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	JAMKOG01 0000859.1	39897	15910-17081	KJ814903.1, SLF14	99.9	-
SLF19	JAMKOG01 0000970.1	9042438	7316307-7317416	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain
SLF18	JAMKOG01 0000970.1	9042438	7335324-7334209	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF17Ψ	JAMKOG01 0001343.1	2673166	941990-940905	SL2.31ch01:40853100-40851001_SLF17Ψ	99.8	-
SLF13-2Ψ	JAMKOG01 0001798.1	35436	29832-28629	NM_001301435.1, SLF13	99	-
SLF14-2Ψ	JAMKOG01 0002553.1	4487281	1200195-1199025	KJ814903.1, SLF14	100	-
SLF13-3	JAMKOG01 0002666.1	30325	13405-12212	NM_001301435.1, SLF13	99.9	F-box domain
SLF15	JAMKOG01 0002839.1	3362363	2162467-2161208	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	JAMKOG01 0002839.1	3362363	2685681-2684500	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain

Solanum lycopersicum 'Fla. 8814 with the Fusarium wilt resistance I-3 introgression (cultivar)' ASM3046346v1 S genes

Query	Contig	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF14Ψ	JAMKOH01 0000585.1	3531023	2311530-2312700	KJ814903.1, SLF14	100	-
SLF15	JAMKOH01 0000660.1	4381508	2164220-2162961	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	JAMKOH01 0000660.1	4381508	2687504-2686323	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF19	JAMKOH01 0000718.1	10079551	8362354-8363463	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain
SLF18	JAMKOH01 0000718.1	10079551	8381371-8380256	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF6Ψ	JAMKOH01 0001125.1	3407744	188913-190058	KJ814944.1, SLF6	100	-
SLF5Ψ	JAMKOH01 0001125.1	3407744	206448-207616	KJ814872.1, SLF5	100	-
SLF4Ψ	JAMKOH01 0001125.1	3407744	287136-288302	KJ814943.1, SLF4	100	-
SLF12Ψ	JAMKOH01 0001125.1	3407744	354436-353305	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF2Ψ	JAMKOH01 0001125.1	3407744	410994-412175	KJ814870.1, SLF2	100	-
S-RNase	JAMKOH01 0001125.1	3407744	1287655-1287894 1287989-1288417	XM_004229015.1, Ribonuclease S-3	99.8	Ribonuclease T2 family
SLF1	JAMKOH01 0001125.1	3407744	2097236-2096067	NM_001301439.2, SLF1	99.9	F-box domain
SLF17Ψ	JAMKOH01 0002666.1	1402666	1119154-1120239	SL2.31ch01:40853100-40851001_SLF17Ψ	99.8	-
SLF7-2Ψ	JAMKOH01 0002683.1	44988	29840-30939	SL2.31ch01:46267800-46265701_SLF7Ψ	99.8	-
SLF13	JAMKOH01 0002790.1	8543683	1483170-1484363	NM_001301435.1, SLF13	100	F-box associated
SLF12	JAMKOH01 0002790.1	8543683	2328630-2329793	NM_001301441.1, SLF12	100	F-box associated
SLF11	JAMKOH01 0002790.1	8543683	4087521-4086349	KJ814877.1, SLF11	100	F-box associated
SLF10Ψ	JAMKOH01 0002790.1	8543683	6038773-6037542	KJ814899.1, SLF10	100	-
SLF9	JAMKOH01 0002790.1	8543683	6483969-6485033	NM_001329461.2, SLF9	100	F-box domain
SLF7Ψ	JAMKOH01 0003094.1	501893	108475-109570	SL2.31ch01:46267800-46265701_SLF7Ψ	99.5	-
SLF8Ψ	JAMKOH01 0003094.1	501893	133248-134416	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-

Solanum lycopersicum 'M82 (cultivar)' V100 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	HG975513.1	90311507	2198632-2197373	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	HG975513.1	90311507	2723497-2722316	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	HG975513.1	90311507	40854217-40853132	SL2.31ch01:40853100-40851001_SLF17Ψ	100	-
SLF1	HG975513.1	90311507	43798494-43799663	NM_001301439.2, SLF1	100	F-box domain
S-RNase	HG975513.1	90311507	44603992-44603753, 44603655-44603230	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	HG975513.1	90311507	45461965-45460784	KJ814870.1, SLF2	100	-
SLF12Ψ	HG975513.1	90311507	45518523-45519654	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	HG975513.1	90311507	45586368-45585202	KJ814943.1, SLF4	100	-
SLF5Ψ	HG975513.1	90311507	45666028-45664860	KJ814872.1, SLF5	100	-
SLF6Ψ	HG975513.1	90311507	45683684-45682539	KJ814944.1, SLF6	100	-
SLF8Ψ	HG975513.1	90311507	46244063-46242895	SL2.31ch01:46243000-46240701_SLF8Ψ	100	-
SLF7Ψ	HG975513.1	90311507	46268844-46267747	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	HG975513.1	90311507	48432191-48431127	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	HG975513.1	90311507	48876822-48878053	KJ814899.1, SLF10	100	-
SLF11	HG975513.1	90311507	50835568-50836740	KJ814877.1, SLF11	100	F-box associated
SLF12	HG975513.1	90311507	52598335-52597172	NM_001301441.1, SLF12	100	F-box associated
SLF13	HG975513.1	90311507	53439332-53438139	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	HG975513.1	90311507	56635284-56634114	KJ814903.1, SLF14	100	-
SLF18	HG975513.1	90311507	67742073-67743188	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	HG975513.1	90311507	67761090-67759981	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum 'Moneyberg-TMV (cultivar)' MbTMVv1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	OU640344.1	96472709	2757203-2755944	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	OU640344.1	96472709	3279188-3278007	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	OU640344.1	96472709	46380034-46378949	SL2.31ch01:40853100-40851001_SLF17Ψ	99.8	-
SLF1	OU640344.1	96472709	49435612-49436781	NM_001301439.2, SLF1	99.8	F-box domain
S-RNase	OU640344.1	96472709	50245941-50245702 50245604-50245179	XM_004229015.1, Ribonuclease S-3	99.8	Ribonuclease T2 family
SLF2Ψ	OU640344.1	96472709	51109345-51108164	KJ814870.1, SLF2	100	-
SLF12Ψ	OU640344.1	96472709	51165902-51167033	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	OU640344.1	96472709	51233205-51232039	KJ814943.1, SLF4	100	-
SLF5Ψ	OU640344.1	96472709	51313913-51312745	KJ814872.1, SLF5	100	-
SLF6Ψ	OU640344.1	96472709	51331448-51330303	KJ814944.1, SLF6	99.9	-
SLF8Ψ	OU640344.1	96472709	51888947-51887779	SL2.31ch01:46243000-46240701_SLF8Ψ	99.9	-
SLF7Ψ	OU640344.1	96472709	51913714-51912617	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	OU640344.1	96472709	54116689-54115625	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	OU640344.1	96472709	54562682-54563913	KJ814899.1, SLF10	99.9	-
SLF11	OU640344.1	96472709	56504126-56505298	KJ814877.1, SLF11	100	F-box associated
SLF12	OU640344.1	96472709	58276147-58274984	NM_001301441.1, SLF12	100	F-box associated
SLF13	OU640344.1	96472709	59128298-59127105	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	OU640344.1	96472709	62338808-62337638	KJ814903.1, SLF14	100	-
SLF18	OU640344.1	96472709	73485249-73486364	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	OU640344.1	96472709	73504275-73503166	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum SolanumLycopersicum S genes

Query	Contig	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CAKMHT030000201.1	33175948	2213599-2212340	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	CAKMHT030000201.1	33175948	2735529-2734348	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF13	CAKMHT030000206.1	14531610	1561919-1563112	NM_001301435.1, SLF13	100	F-box domain
SLF12	CAKMHT030000206.1	14531610	2407387-2408550	NM_001301441.1, SLF12	100	F-box domain
SLF11	CAKMHT030000206.1	14531610	4166381-4165209	KJ814877.1, SLF11	100	F-box domain
SLF10Ψ	CAKMHT030000206.1	14531610	6117767-6116536	KJ814899.1, SLF10	100	-
SLF9	CAKMHT030000206.1	14531610	6562954-6564018	NM_001329461.2, SLF9	100	F-box domain
SLF7Ψ	CAKMHT030000206.1	14531610	8731030-8732127	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF8Ψ	CAKMHT030000206.1	14531610	8755809-8756977	SL2.31ch01:46243000-46240701_SLF8Ψ	100	-
SLF6Ψ	CAKMHT030000206.1	14531610	9313137-9314282	KJ814944.1, SLF6	100	-
SLF5Ψ	CAKMHT030000206.1	14531610	9330673-9331841	KJ814872.1, SLF5	100	-
SLF4Ψ	CAKMHT030000206.1	14531610	9411371-9412537	KJ814943.1, SLF4	100	-
SLF12Ψ	CAKMHT030000206.1	14531610	9478671-9477540	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF2Ψ	CAKMHT030000206.1	14531610	9535231-9536412	KJ814870.1, SLF2	100	-
S-RNase	CAKMHT030000206.1	14531610	10422130-10422369 10422464-10422892	XM_004229015.1, Ribonuclease S-3	99.6	Ribonuclease T2 family
SLF1	CAKMHT030000206.1	14531610	11231753-11230584	NM_001301439.2, SLF1	100	F-box domain
SLF17Ψ	CAKMHT030000206.1	14531610	14233602-14234687	SL2.31ch01:40853100-40851001_SLF17Ψ	100	-
SLF19	CAKMHT030000271.1	35357441	22960301-22961410	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain
SLF18	CAKMHT030000271.1	35357441	22979325-22978210	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF14Ψ	CAKMHT030000271.1	35357441	34137131-34138301	KJ814903.1, SLF14	100	-

Solanum lycopersicum gwh Tao_Lin S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	GWHBAUD 00000001	91866112	2144101-2142842	SL2.31ch01:2198500-2196501_SLF15	100	F-box domain
SLF16	GWHBAUD 00000001	91866112	2666068-2664887	SL2.31ch01:2723400-2721301_SLF16	100	F-box domain
SLF17Ψ	GWHBAUD 00000001	91866112	41862564-41861479	SL2.31ch01:40853100-40851001_SLF17Ψ	100	-
SLF1	GWHBAUD 00000001	91866112	44862998-44864167	NM_001301439.2, SLF1	100	F-box domain
S-RNase	GWHBAUD 00000001	91866112	45672592-45672353 45672255-45671830	XM_004229015.1, Ribonuclease S-3	100	Ribonuclease T2 family
SLF2Ψ	GWHBAUD 00000001	91866112	46559497-46558316	KJ814870.1, SLF2	100	-
SLF12Ψ	GWHBAUD 00000001	91866112	46616065-46617196	SL2.31ch01:45516501-45518600_SLF12Ψ	100	-
SLF4Ψ	GWHBAUD 00000001	91866112	46683367-46682201	KJ814943.1, SLF4	100	-
SLF5Ψ	GWHBAUD 00000001	91866112	46764066-46762898	KJ814872.1, SLF5	100	-
SLF6Ψ	GWHBAUD 00000001	91866112	46781602-46780457	KJ814944.1, SLF6	100	-
SLF8Ψ	GWHBAUD 00000001	91866112	47338932-47337764	SL2.31ch01:46243000-46240701_SLF8Ψ	100	-
SLF7Ψ	GWHBAUD 00000001	91866112	47363711-47362614	SL2.31ch01:46267800-46265701_SLF7Ψ	100	-
SLF9	GWHBAUD 00000001	91866112	49531820-49530756	NM_001329461.2, SLF9	100	F-box domain
SLF10Ψ	GWHBAUD 00000001	91866112	49977014-49978245	KJ814899.1, SLF10	100	-
SLF11	GWHBAUD 00000001	91866112	51928457-51929629	KJ814877.1, SLF11	100	F-box associated
SLF12	GWHBAUD 00000001	91866112	53687508-53686345	NM_001301441.1, SLF12	100	F-box associated
SLF13	GWHBAUD 00000001	91866112	54533010-54531817	NM_001301435.1, SLF13	100	F-box associated
SLF14Ψ	GWHBAUD 00000001	91866112	57743756-57742586	KJ814903.1, SLF14	100	-
SLF18	GWHBAUD 00000001	91866112	68901807-68902922	SL2.31ch01:67739501-67741500_SLF18	100	F-box domain
SLF19	GWHBAUD 00000001	91866112	68920831-68919722	SL2.31ch01:67757501-67759600_SLF19	100	F-box domain

Solanum lycopersicum gwh PP S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	GWHBJBJ00000002	95071404	2275143-2273884	SL2.31ch01:2198500-2196501_SLF15	99.4	F-box domain
SLF16	GWHBJBJ00000002	95071404	2820966-2819785	SL2.31ch01:2723400-2721301_SLF16	99.7	F-box domain
SLF17	GWHBJBJ00000002	95071404	45528856-45527771	SL2.31ch01:40853100-40851001_SLF17Ψ	98.6	F-box domain
SLF23Ψ	GWHBJBJ00000002	95071404	49046135-49044979	KU960927.1, SLF23	99.2	-
SLF21	GWHBJBJ00000002	95071404	49344120-49345421	KU960918.1, SLF21	98	F-box domain
SLF7Ψ	GWHBJBJ00000002	95071404	49721226-49722395	KJ814874.1, SLF7	99.7	-
SLF1Ψ	GWHBJBJ00000002	95071404	50482327-50481158	KJ814869.1, SLF1	99.4	-
SLF9	GWHBJBJ00000002	95071404	52460226-52459162	NM_001329461.2, SLF9	99	F-box domain
SLF10Ψ	GWHBJBJ00000002	95071404	52937816-52939047	KJ814876.1, SLF10	99.8	-
SLF11	GWHBJBJ00000002	95071404	54530331-54531503	KJ814877.1, SLF11	100	F-box associated
SLF12	GWHBJBJ00000002	95071404	56220526-56219363	KJ814878.1, SLF12	99.7	F-box associated
SLF13	GWHBJBJ00000002	95071404	57064306-57063104	KJ814879.1, SLF13	100	F-box associated
SLF14Ψ	GWHBJBJ00000002	95071404	60660953-60659788	KJ814903.1, SLF14	99.5	-
SLF18	GWHBJBJ00000002	95071404	72072148-72073257	SL2.31ch01:67739501-67741500_SLF18	99.1	F-box domain
SLF19	GWHBJBJ00000002	95071404	72091231-72090122	SL2.31ch01:67757501-67759600_SLF19	99.2	F-box domain

Downloads

The Solanum lycopersicum S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_lycopersicum

Publications

Su X, Wang B, Geng X, Du Y, Yang Q, Liang B, Meng G, Gao Q, Yang W, Zhu Y, Lin T. A high-continuity and annotated tomato reference genome. BMC Genomics. 2021 Dec 15;22(1):898. doi: 10.1186/s12864-021-08212-x.

Zhou, Y., Zhang, Z., Bao, Z., Li, H., Lyu, Y., Zan, Y., … Huang, S. (2022). Graph pangenome captures missing heritability and empowers tomato breeding. Nature, 606(7914), 527–534. https://www.nature.com/articles/s41586-022-04808-9.

Su X, Wang B, Geng X, Du Y, Yang Q, Liang B, Meng G, Gao Q, Yang W, Zhu Y, Lin T. A high-continuity and annotated tomato reference genome. BMC Genomics. 2021 Dec 15;22(1):898. doi: 10.1186/s12864-021-08212-x.

Li J, Chitwood J, Menda N, Mueller L, Hutton SF. Linkage between the I-3 gene for resistance to Fusarium wilt race 3 and increased sensitivity to bacterial spot in tomato. Theor Appl Genet. 2018 Jan;131(1):145-155. doi: 10.1007/s00122-017-2991-4.

Li N, He Q, Wang J, Wang B, Zhao J, Huang S, Yang T, Tang Y, Yang S, Aisimutuola P, Xu R, Hu J, Jia C, Ma K, Li Z, Jiang F, Gao J, Lan H, Zhou Y, Zhang X, Huang S, Fei Z, Wang H, Li H, Yu Q. Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species. Nat Genet. 2023 May;55(5):852-860. doi: 10.1038/s41588-023-01340-y.

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Sellers GS, Jeffares DC, Lawson B, Prior T, Lunt DH. Identification of individual root-knot nematodes using low coverage long-read sequencing. PLoS One. 2021 Dec 1;16(12):e0253248. doi: 10.1371/journal.pone.0253248.

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