| Analysis Name | Solanum lycopersicum 'Fla. 8814 with the Fusarium wilt resistance I-3 introgression (cultivar)' ASM3046346v1 Assembly & Annotation |
| Sequencing technology | Oxford Nanopore |
| Assembly method | NextDenovo v. 2.4 |
| Release Date | 2023-07-14 |
No publication. NCBI BioProject PRJNA841967. De novo assembly of tomato genomes.
Assembly statistics
| Genome size | 907.1 Mb |
| Number of contigs | 3,532 |
| Contig N50 | 2.7 Mb |
| Contig L50 | 90 |
| Assembly level | Contig |
The Solanum lycopersicum 'Fla. 8814 with the Fusarium wilt resistance I-3 introgression (cultivar)' ASM3046346v1 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_030463465.1_ASM3046346v1_genomic.fna.gz |
The Solanum lycopersicum 'Fla. 8814 with the Fusarium wilt resistance I-3 introgression (cultivar)' ASM3046346v1 genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Solanum lycopersicum 'Fla. 8814 with the Fusarium wilt resistance I-3 introgression (cultivar)' ASM3046346v1 is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Contig | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF14Ψ | JAMKOH010000585.1 | 3531023 | 2311530-2312700 | KJ814903.1, SLF14 | 100 | - |
| SLF15 | JAMKOH010000660.1 | 4381508 | 2164220-2162961 | SL2.31ch01:2198500-2196501_SLF15 | 100 | F-box domain |
| SLF16 | JAMKOH010000660.1 | 4381508 | 2687504-2686323 | SL2.31ch01:2723400-2721301_SLF16 | 100 | F-box domain |
| SLF19 | JAMKOH010000718.1 | 10079551 | 8362354-8363463 | SL2.31ch01:67757501-67759600_SLF19 | 100 | F-box domain |
| SLF18 | JAMKOH010000718.1 | 10079551 | 8381371-8380256 | SL2.31ch01:67739501-67741500_SLF18 | 100 | F-box domain |
| SLF6Ψ | JAMKOH010001125.1 | 3407744 | 188913-190058 | KJ814944.1, SLF6 | 100 | - |
| SLF5Ψ | JAMKOH010001125.1 | 3407744 | 206448-207616 | KJ814872.1, SLF5 | 100 | - |
| SLF4Ψ | JAMKOH010001125.1 | 3407744 | 287136-288302 | KJ814943.1, SLF4 | 100 | - |
| SLF12Ψ | JAMKOH010001125.1 | 3407744 | 354436-353305 | SL2.31ch01:45516501-45518600_SLF12Ψ | 100 | - |
| SLF2Ψ | JAMKOH010001125.1 | 3407744 | 410994-412175 | KJ814870.1, SLF2 | 100 | - |
| S-RNase | JAMKOH010001125.1 | 3407744 | 1287655-12878941287989-1288417 | XM_004229015.1, Ribonuclease S-3 | 99.8 | Ribonuclease T2 family |
| SLF1 | JAMKOH010001125.1 | 3407744 | 2097236-2096067 | NM_001301439.2, SLF1 | 99.9 | F-box domain |
| SLF17Ψ | JAMKOH010002666.1 | 1402666 | 1119154-1120239 | SL2.31ch01:40853100-40851001_SLF17Ψ | 99.8 | - |
| SLF7-2Ψ | JAMKOH010002683.1 | 44988 | 29840-30939 | SL2.31ch01:46267800-46265701_SLF7Ψ | 99.8 | - |
| SLF13 | JAMKOH010002790.1 | 8543683 | 1483170-1484363 | NM_001301435.1, SLF13 | 100 | F-box associated |
| SLF12 | JAMKOH010002790.1 | 8543683 | 2328630-2329793 | NM_001301441.1, SLF12 | 100 | F-box associated |
| SLF11 | JAMKOH010002790.1 | 8543683 | 4087521-4086349 | KJ814877.1, SLF11 | 100 | F-box associated |
| SLF10Ψ | JAMKOH010002790.1 | 8543683 | 6038773-6037542 | KJ814899.1, SLF10 | 100 | - |
| SLF9 | JAMKOH010002790.1 | 8543683 | 6483969-6485033 | NM_001329461.2, SLF9 | 100 | F-box domain |
| SLF7Ψ | JAMKOH010003094.1 | 501893 | 108475-109570 | SL2.31ch01:46267800-46265701_SLF7Ψ | 99.5 | - |
| SLF8Ψ | JAMKOH010003094.1 | 501893 | 133248-134416 | SL2.31ch01:46243000-46240701_SLF8Ψ | 99.9 | - |
Nucleotide
Protein