| Analysis Name | Solanum lycopersicum 'Micro-Tom S9 (cultivar)' SLM_r1.2 Assembly & Annotation |
| Sequencing technology | HiSeq2000 |
| Assembly method | MaSuRCA v. 2.3.2, SSPACE v. 2.0, RaGOO v. 1.1 |
| Release Date | 2023-04-05 |
No publication. NCBI BioProject PRJDB6546. Whole-genome sequencing data of Solanum lycopersicum Micro-Tom S9.
Assembly statistics
| Genome size | 795.7 Mb |
| Number of chromosomes | 12 |
| Number of scaffolds | 165 |
| Scaffold N50 | 67.5 Mb |
| Scaffold L50 | 6 |
| Number of contigs | 21,081 |
| Contig N50 | 121.9 kb |
| Contig L50 | 1,820 |
| Assembly level | Scaffold |
The Solanum lycopersicum 'Micro-Tom S9 (cultivar)' SLM_r1.2 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_030162295.1_SLM_r1.2_genomic.fna.gz |
The Solanum lycopersicum 'Micro-Tom S9 (cultivar)' SLM_r1.2 genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Solanum lycopersicum 'Micro-Tom S9 (cultivar)' SLM_r1.2 is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Scaffold | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF15 | BSVZ01000001.1 | 92770581 | 2179674-2178415 | SL2.31ch01:2198500-2196501_SLF15 | 99.4 | F-box domain |
| SLF16 | BSVZ01000001.1 | 92770581 | 2739788-2738607 | SL2.31ch01:2723400-2721301_SLF16 | 99.8 | F-box domain |
| SLF17Ψ | BSVZ01000001.1 | 92770581 | 43287154-43286069 | SL2.31ch01:40853100-40851001_SLF17Ψ | 99.8 | - |
| SLF1 | BSVZ01000001.1 | 92770581 | 46202212-46203381 | NM_001301439.2, SLF1 | 99.8 | F-box domain |
| S-RNase | BSVZ01000001.1 | 92770581 | 47009431-4700919247009094-47008669 | XM_004229015.1, Ribonuclease S-3 | 99.8 | Ribonuclease T2 family |
| SLF2Ψ | BSVZ01000001.1 | 92770581 | 47873181-47872000 | KJ814870.1, SLF2 | 100 | - |
| SLF12Ψ | BSVZ01000001.1 | 92770581 | 47929715-47930846 | SL2.31ch01:45516501-45518600_SLF12Ψ | 100 | - |
| SLF4Ψ | BSVZ01000001.1 | 92770581 | 47996993-47995827 | KJ814943.1, SLF4 | 100 | - |
| SLF5Ψ | BSVZ01000001.1 | 92770581 | 48076566-48075398 | KJ814872.1, SLF5 | 100 | - |
| SLF6Ψ | BSVZ01000001.1 | 92770581 | 48093605-48092460 | KJ814944.1, SLF6 | 99.9 | - |
| SLF8Ψ | BSVZ01000001.1 | 92770581 | 48651817-48650649 | SL2.31ch01:46243000-46240701_SLF8Ψ | 99.9 | - |
| SLF7Ψ | BSVZ01000001.1 | 92770581 | 48676588-48675491 | SL2.31ch01:46267800-46265701_SLF7Ψ | 100 | - |
| SLF9 | BSVZ01000001.1 | 92770581 | 50871803-50870739 | NM_001329461.2, SLF9 | 100 | F-box domain |
| SLF10Ψ | BSVZ01000001.1 | 92770581 | 51327522-51328753 | KJ814899.1, SLF10 | 99.9 | - |
| SLF11 | BSVZ01000001.1 | 92770581 | 53267369-53268541 | KJ814877.1, SLF11 | 100 | F-box associated |
| SLF12 | BSVZ01000001.1 | 92770581 | 55032078-55030915 | NM_001301441.1, SLF12 | 100 | F-box associated |
| SLF13 | BSVZ01000001.1 | 92770581 | 55871046-55869853 | NM_001301435.1, SLF13 | 100 | F-box associated |
| SLF14Ψ | BSVZ01000001.1 | 92770581 | 58884942-58883772 | KJ814903.1, SLF14 | 100 | - |
| SLF18 | BSVZ01000001.1 | 92770581 | 69933527-69934642 | SL2.31ch01:67739501-67741500_SLF18 | 100 | F-box domain |
| SLF19 | BSVZ01000001.1 | 92770581 | 69952552-69951443 | SL2.31ch01:67757501-67759600_SLF19 | 100 | F-box domain |
Nucleotide
Protein