| Analysis Name | Solanum lycopersicum 'Moneyberg-TMV (cultivar)' MbTMVv1 Assembly & Annotation |
| Sequencing technology | ONT, HiFi |
| Assembly method | Necat, Flye |
| Release Date | 2021-09-28 |
No publication. NCBI BioProject PRJEB44956. Genome sequencing and assembly of Tomato cultivar Moneyberg-TMV using PacBio HiFi and ONT long read sequencing.
Assembly statistics
| Genome size | 833 Mb |
| Number of chromosomes | 12 |
| Number of scaffolds | 66 |
| Scaffold N50 | 68.5 Mb |
| Scaffold L50 | 6 |
| Number of contigs | 66 |
| Contig N50 | 68.5 Mb |
| Contig L50 | 6 |
| Assembly level | Chromosome |
The Solanum lycopersicum 'Moneyberg-TMV (cultivar)' MbTMVv1 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_915070445.1_MbTMVv1_genomic.fna.gz |
The Solanum lycopersicum 'Moneyberg-TMV (cultivar)' MbTMVv1 genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Solanum lycopersicum 'Moneyberg-TMV (cultivar)' MbTMVv1 is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Chr | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF15 | OU640344.1 | 96472709 | 2757203-2755944 | SL2.31ch01:2198500-2196501_SLF15 | 100 | F-box domain |
| SLF16 | OU640344.1 | 96472709 | 3279188-3278007 | SL2.31ch01:2723400-2721301_SLF16 | 100 | F-box domain |
| SLF17Ψ | OU640344.1 | 96472709 | 46380034-46378949 | SL2.31ch01:40853100-40851001_SLF17Ψ | 99.8 | - |
| SLF1 | OU640344.1 | 96472709 | 49435612-49436781 | NM_001301439.2, SLF1 | 99.8 | F-box domain |
| S-RNase | OU640344.1 | 96472709 | 50245941-5024570250245604-50245179 | XM_004229015.1, Ribonuclease S-3 | 99.8 | Ribonuclease T2 family |
| SLF2Ψ | OU640344.1 | 96472709 | 51109345-51108164 | KJ814870.1, SLF2 | 100 | - |
| SLF12Ψ | OU640344.1 | 96472709 | 51165902-51167033 | SL2.31ch01:45516501-45518600_SLF12Ψ | 100 | - |
| SLF4Ψ | OU640344.1 | 96472709 | 51233205-51232039 | KJ814943.1, SLF4 | 100 | - |
| SLF5Ψ | OU640344.1 | 96472709 | 51313913-51312745 | KJ814872.1, SLF5 | 100 | - |
| SLF6Ψ | OU640344.1 | 96472709 | 51331448-51330303 | KJ814944.1, SLF6 | 99.9 | - |
| SLF8Ψ | OU640344.1 | 96472709 | 51888947-51887779 | SL2.31ch01:46243000-46240701_SLF8Ψ | 99.9 | - |
| SLF7Ψ | OU640344.1 | 96472709 | 51913714-51912617 | SL2.31ch01:46267800-46265701_SLF7Ψ | 100 | - |
| SLF9 | OU640344.1 | 96472709 | 54116689-54115625 | NM_001329461.2, SLF9 | 100 | F-box domain |
| SLF10Ψ | OU640344.1 | 96472709 | 54562682-54563913 | KJ814899.1, SLF10 | 99.9 | - |
| SLF11 | OU640344.1 | 96472709 | 56504126-56505298 | KJ814877.1, SLF11 | 100 | F-box associated |
| SLF12 | OU640344.1 | 96472709 | 58276147-58274984 | NM_001301441.1, SLF12 | 100 | F-box associated |
| SLF13 | OU640344.1 | 96472709 | 59128298-59127105 | NM_001301435.1, SLF13 | 100 | F-box associated |
| SLF14Ψ | OU640344.1 | 96472709 | 62338808-62337638 | KJ814903.1, SLF14 | 100 | - |
| SLF18 | OU640344.1 | 96472709 | 73485249-73486364 | SL2.31ch01:67739501-67741500_SLF18 | 100 | F-box domain |
| SLF19 | OU640344.1 | 96472709 | 73504275-73503166 | SL2.31ch01:67757501-67759600_SLF19 | 100 | F-box domain |
Nucleotide
Protein