| Analysis Name | Solanum lycopersicum 'Fla. 8814 with a shortened I-3 introgression (cultivar)' ASM3046343v1 Assembly & Annotation |
| Sequencing technology | Oxford Nanopore |
| Assembly method | NextDenovo v. 2.4 |
| Release Date | 2023-07-14 |
No publication. NCBI BioProject PRJNA841967. De novo assembly of tomato genomes.
Assembly statistics
| Genome size | 915.7 Mb |
| Number of contigs | 3,638 |
| Contig N50 | 3.2 Mb |
| Contig L50 | 76 |
| Assembly level | Contig |
The Solanum lycopersicum 'Fla. 8814 with a shortened I-3 introgression (cultivar)' ASM3046343v1 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_030463435.1_ASM3046343v1_genomic.fna.gz |
The Solanum lycopersicum 'Fla. 8814 with a shortened I-3 introgression (cultivar)' ASM3046343v1 genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Solanum lycopersicum 'Fla. 8814 with a shortened I-3 introgression (cultivar)' ASM3046343v1 is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Contig | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF1 | JAMKOG010000016.1 | 10239512 | 183113-184282 | NM_001301439.2, SLF1 | 99.9 | F-box domain |
| S-RNase | JAMKOG010000016.1 | 10239512 | 992722-992483992385-991960 | XM_004229015.1, Ribonuclease S-3 | 100 | Ribonuclease T2 family |
| SLF2Ψ | JAMKOG010000016.1 | 10239512 | 1879757-1878576 | KJ814870.1, SLF2 | 100 | - |
| SLF12Ψ | JAMKOG010000016.1 | 10239512 | 1936312-1937443 | SL2.31ch01:45516501-45518600_SLF12Ψ | 100 | - |
| SLF4Ψ | JAMKOG010000016.1 | 10239512 | 2003612-2002446 | KJ814943.1, SLF4 | 100 | - |
| SLF5Ψ | JAMKOG010000016.1 | 10239512 | 2084300-2083132 | KJ814872.1, SLF5 | 100 | - |
| SLF6Ψ | JAMKOG010000016.1 | 10239512 | 2101837-2100692 | KJ814944.1, SLF6 | 100 | - |
| SLF8Ψ | JAMKOG010000016.1 | 10239512 | 2659154-2657986 | SL2.31ch01:46243000-46240701_SLF8Ψ | 99.9 | - |
| SLF7Ψ | JAMKOG010000016.1 | 10239512 | 2683933-2682836 | SL2.31ch01:46267800-46265701_SLF7Ψ | 100 | - |
| SLF9 | JAMKOG010000016.1 | 10239512 | 4851781-4850717 | NM_001329461.2, SLF9 | 100 | F-box domain |
| SLF10Ψ | JAMKOG010000016.1 | 10239512 | 5296976-5298207 | KJ814899.1, SLF10 | 100 | - |
| SLF11 | JAMKOG010000016.1 | 10239512 | 7248247-7249419 | KJ814877.1, SLF11 | 100 | F-box associated |
| SLF12 | JAMKOG010000016.1 | 10239512 | 9007154-9005991 | NM_001301441.1, SLF12 | 100 | F-box associated |
| SLF13 | JAMKOG010000016.1 | 10239512 | 9852645-9851452 | NM_001301435.1, SLF13 | 100 | F-box associated |
| SLF14Ψ | JAMKOG010000859.1 | 39897 | 15910-17081 | KJ814903.1, SLF14 | 99.9 | - |
| SLF19 | JAMKOG010000970.1 | 9042438 | 7316307-7317416 | SL2.31ch01:67757501-67759600_SLF19 | 100 | F-box domain |
| SLF18 | JAMKOG010000970.1 | 9042438 | 7335324-7334209 | SL2.31ch01:67739501-67741500_SLF18 | 100 | F-box domain |
| SLF17Ψ | JAMKOG010001343.1 | 2673166 | 941990-940905 | SL2.31ch01:40853100-40851001_SLF17Ψ | 99.8 | - |
| SLF13-2Ψ | JAMKOG010001798.1 | 35436 | 29832-28629 | NM_001301435.1, SLF13 | 99 | - |
| SLF14-2Ψ | JAMKOG010002553.1 | 4487281 | 1200195-1199025 | KJ814903.1, SLF14 | 100 | - |
| SLF13-3 | JAMKOG010002666.1 | 30325 | 13405-12212 | NM_001301435.1, SLF13 | 99.9 | F-box domain |
| SLF15 | JAMKOG010002839.1 | 3362363 | 2162467-2161208 | SL2.31ch01:2198500-2196501_SLF15 | 100 | F-box domain |
| SLF16 | JAMKOG010002839.1 | 3362363 | 2685681-2684500 | SL2.31ch01:2723400-2721301_SLF16 | 100 | F-box domain |
Nucleotide
Protein