| Analysis Name | Solanum lycopersicum 'LA1673 (cultivar)' SLYcer_r1.1 Assembly & Annotation |
| Sequencing technology | Sequel |
| Assembly method | FALCON-integrate v. 0.3.0 |
| Release Date | 2021-01-29 |
No publication. NCBI BioProject PRJDB10420. Genome seqeunces of tomato wild ancestors.
Assembly statistics
| Genome size | 804.5 Mb |
| Number of contigs | 202 |
| Contig N50 | 9.5 Mb |
| Contig L50 | 22 |
| Assembly level | Contig |
The Solanum lycopersicum 'LA1673 (cultivar)' SLYcer_r1.1 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_016860505.2_SLYcer_r1.1_genomic.fna.gz |
The Solanum lycopersicum 'LA1673 (cultivar)' SLYcer_r1.1 genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Solanum lycopersicum 'LA1673 (cultivar)' SLYcer_r1.1 is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Contig | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF19 | BMBW01000001.1 | 44614784 | 22967071-22965962 | SL2.31ch01:67757501-67759600_SLF19 | 99.7 | F-box domain |
| SLF18 | BMBW01000001.1 | 44614784 | 22985066-22983957 | SL2.31ch01:67739501-67741500_SLF18 | 99.1 | F-box domain |
| SLF14Ψ | BMBW01000001.1 | 44614784 | 34381967-34383137 | KJ814903.1, SLF14 | 99.8 | - |
| SLF13 | BMBW01000001.1 | 44614784 | 37815598-37816800 | KJ814879.1, SLF13 | 100 | F-box domain |
| SLF2 | BMBW01000001.1 | 44614784 | 37815613-37816800 | BK009231.1, SLF2 | 99.8 | F-box domain |
| SLF12 | BMBW01000001.1 | 44614784 | 38658630-38659793 | KJ814878.1, SLF12 | 99.7 | F-box domain |
| SLF11 | BMBW01000001.1 | 44614784 | 40528472-40527300 | KJ814877.1, SLF11 | 100 | F-box associated |
| SLF10Ψ | BMBW01000001.1 | 44614784 | 42343447-42342216 | KJ814876.1, SLF10 | 99.9 | - |
| SLF9 | BMBW01000001.1 | 44614784 | 42823668-42824732 | NM_001329461.2, SLF9 | 99 | F-box domain |
| SLF16 | BMBW01000003.1 | 35228137 | 32458658-32459839 | SL2.31ch01:2723400-2721301_SLF16 | 99.8 | F-box domain |
| SLF15Ψ | BMBW01000003.1 | 35228137 | 32995985-32997243 | SL2.31ch01:2198500-2196501_SLF15 | 99.4 | - |
| SLF23 | BMBW01000063.1 | 3934301 | 2335982-2334825 | KU960927.1, SLF23 | 99.4 | F-box domain |
| SLF21 | BMBW01000063.1 | 3934301 | 2643784-2645085 | KU960918.1, SLF21 | 98 | F-box domain |
| SLF7Ψ | BMBW01000063.1 | 3934301 | 3020725-3021894 | KJ814874.1, SLF7 | 99.6 | - |
| SLF1Ψ | BMBW01000063.1 | 3934301 | 3813675-3812506 | KJ814869.1, SLF1 | 99.4 | - |
| SLF17 | BMBW01000086.1 | 3934301 | 1190713-1189628 | SL2.31ch01:40853100-40851001_SLF17Ψ | 98.6 | F-box domain |
Nucleotide
Protein