| Analysis Name | Solanum lycopersicum gwh PP Assembly & Annotation |
| Sequencing technology | PacBio |
| Assembly method | HiFiasm 0.16.1 |
| Release Date | 2022-05-12 |
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Abstract-
Assembly statistics
| Genome size (bp) | 848,496,940 |
| Genome sequence No. | 13 |
| Maximum genome sequence length (bp) | 95,071,404 |
| Minimum genome sequence length (bp) | 14,219,973 |
| Average genome sequence length (bp) | 65,268,995 |
| Genome sequence N50 (bp) | 69,171,522 |
| Genome sequence N90 (bp) | 60,155,683 |
| Assembly level | Chromosome |
The Solanum lycopersicum gwh PP Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GWHBJBJ00000000.genome.fasta.gz |
The Solanum lycopersicum gwh PP genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Solanum lycopersicum gwh PP is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Chr | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF15 | GWHBJBJ00000002 | 95071404 | 2275143-2273884 | SL2.31ch01:2198500-2196501_SLF15 | 99.4 | F-box domain |
| SLF16 | GWHBJBJ00000002 | 95071404 | 2820966-2819785 | SL2.31ch01:2723400-2721301_SLF16 | 99.7 | F-box domain |
| SLF17 | GWHBJBJ00000002 | 95071404 | 45528856-45527771 | SL2.31ch01:40853100-40851001_SLF17Ψ | 98.6 | F-box domain |
| SLF23Ψ | GWHBJBJ00000002 | 95071404 | 49046135-49044979 | KU960927.1, SLF23 | 99.2 | - |
| SLF21 | GWHBJBJ00000002 | 95071404 | 49344120-49345421 | KU960918.1, SLF21 | 98 | F-box domain |
| SLF7Ψ | GWHBJBJ00000002 | 95071404 | 49721226-49722395 | KJ814874.1, SLF7 | 99.7 | - |
| SLF1Ψ | GWHBJBJ00000002 | 95071404 | 50482327-50481158 | KJ814869.1, SLF1 | 99.4 | - |
| SLF9 | GWHBJBJ00000002 | 95071404 | 52460226-52459162 | NM_001329461.2, SLF9 | 99 | F-box domain |
| SLF10Ψ | GWHBJBJ00000002 | 95071404 | 52937816-52939047 | KJ814876.1, SLF10 | 99.8 | - |
| SLF11 | GWHBJBJ00000002 | 95071404 | 54530331-54531503 | KJ814877.1, SLF11 | 100 | F-box associated |
| SLF12 | GWHBJBJ00000002 | 95071404 | 56220526-56219363 | KJ814878.1, SLF12 | 99.7 | F-box associated |
| SLF13 | GWHBJBJ00000002 | 95071404 | 57064306-57063104 | KJ814879.1, SLF13 | 100 | F-box associated |
| SLF14Ψ | GWHBJBJ00000002 | 95071404 | 60660953-60659788 | KJ814903.1, SLF14 | 99.5 | - |
| SLF18 | GWHBJBJ00000002 | 95071404 | 72072148-72073257 | SL2.31ch01:67739501-67741500_SLF18 | 99.1 | F-box domain |
| SLF19 | GWHBJBJ00000002 | 95071404 | 72091231-72090122 | SL2.31ch01:67757501-67759600_SLF19 | 99.2 | F-box domain |
Nucleotide
Protein