| Analysis Name | Solanum lycopersicum 'EA00488 (cultivar)' ASM2575983v1 Assembly & Annotation |
| Sequencing technology | Oxford Nanopore PromethION; Illumina |
| Assembly method | NECAT v. 0.0.1; NextPolish v. 1.4.0; RagTag v. 2.0.1 |
| Release Date | 2022-10-20 |
No publication. NCBI BioProject PRJNA865891. Twenty-one genome assemblies of wild and cultivated tomatoes.
Assembly statistics
| Genome size | 775.8 Mb |
| Number of chromosomes | 12 |
| Number of scaffolds | 515 |
| Scaffold N50 | 64.7 Mb |
| Scaffold L50 | 6 |
| Number of contigs | 974 |
| Contig N50 | 3.7 Mb |
| Contig L50 | 66 |
| Assembly level | Chromosome |
The Solanum lycopersicum 'EA00488 (cultivar)' ASM2575983v1 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_025759835.1_ASM2575983v1_genomic.fna.gz |
The Solanum lycopersicum 'EA00488 (cultivar)' ASM2575983v1 genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Solanum lycopersicum 'EA00488 (cultivar)' ASM2575983v1 is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Chr | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF15 | CM047177.1 | 89859164 | 2151458-2150199 | SL2.31ch01:2198500-2196501_SLF15 | 100 | F-box domain |
| SLF16 | CM047177.1 | 89859164 | 2673034-2671853 | SL2.31ch01:2723400-2721301_SLF16 | 100 | F-box domain |
| SLF17Ψ | CM047177.1 | 89859164 | 40526121-40525036 | SL2.31ch01:40853100-40851001_SLF17Ψ | 100 | - |
| SLF1 | CM047177.1 | 89859164 | 43377551-43378720 | NM_001301439.2, SLF1 | 100 | F-box domain |
| S-RNase | CM047177.1 | 89859164 | 44167109-4416687044166772-44166347 | XM_004229015.1,Ribonuclease S-3 | 100 | Ribonuclease T2 family |
| SLF2Ψ | CM047177.1 | 89859164 | 45035895-45034714 | KJ814870.1, SLF2 | 100 | - |
| SLF12Ψ | CM047177.1 | 89859164 | 45092431-45093562 | SL2.31ch01:45516501-45518600_SLF12Ψ | 100 | - |
| SLF4Ψ | CM047177.1 | 89859164 | 45159657-45158491 | KJ814943.1, SLF4 | 100 | - |
| SLF5Ψ | CM047177.1 | 89859164 | 45240187-45239019 | KJ814872.1, SLF5 | 100 | - |
| SLF6Ψ | CM047177.1 | 89859164 | 45257658-45256513 | KJ814944.1, SLF6 | 100 | - |
| SLF8Ψ | CM047177.1 | 89859164 | 45814368-45813200 | SL2.31ch01:46243000-46240701_SLF8Ψ | 100 | - |
| SLF7Ψ | CM047177.1 | 89859164 | 45839147-45838050 | SL2.31ch01:46267800-46265701_SLF7Ψ | 100 | - |
| SLF9 | CM047177.1 | 89859164 | 48005530-48004466 | NM_001329461.2, SLF9 | 100 | F-box domain |
| SLF10Ψ | CM047177.1 | 89859164 | 48450533-48451764 | KJ814899.1, SLF10 | 100 | - |
| SLF11 | CM047177.1 | 89859164 | 50400517-50401689 | KJ814877.1, SLF11 | 100 | F-box associated |
| SLF12 | CM047177.1 | 89859164 | 52158209-52157046 | NM_001301441.1, SLF12 | 100 | F-box associated |
| SLF13 | CM047177.1 | 89859164 | 53002711-53001518 | NM_001301435.1, SLF13 | 100 | F-box associated |
| SLF14Ψ | CM047177.1 | 89859164 | 56010344-56009174 | KJ814903.1, SLF14 | 100 | - |
| SLF18 | CM047177.1 | 89859164 | 67140288-67141403 | SL2.31ch01:67739501-67741500_SLF18 | 100 | F-box domain |
| SLF19 | CM047177.1 | 89859164 | 67159312-67158203 | SL2.31ch01:67757501-67759600_SLF19 | 100 | F-box domain |
Nucleotide
Protein