Solanum piurae
Overview
| Genus | Solanum |
| Species | piurae |
| Common Name | Wild potato |
| Abbreviation | S. piurae |
| Ploidy | Diploid (2x) |
| Chromosome Number | 2n=2x=24 |
| Genome Size | 740 Mb |
| Genome Assemblies | 2 |
| Cross Reference | NCBI taxon: 205571 |
Organism Image
Description
Solanum piurae is a species of limited distribution in northern Peru. Plants reach about two and a half feet tall. Flowers white. Berries small and round. Tubers small, white, and mostly moniliform. Native habitat is rocky slopes from 8,200 to 10,800 feet (2500 to 3300 m) (Correll 1962).
S genes
Solanum piurae pur1868 S genes
| Query | Contig | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF9Ψ | JAJOOO010000341.1 | 56428 | 38959-37816 | Solanum tuberosum DM8.1, SLF9 | 97.4 | - |
| SLF11 | JAJOOO010002568.1 | 23314 | 5466-6636 | Solanum tuberosum DM8.1, SLF11 | 96.2 | F-box domain |
| SLF21 | JAJOOO010002649.1 | 22195 | 19720-18500 | Solanum tuberosum DM8.1, SLF21 | 96.2 | F-box domain |
| SLF5 | JAJOOO010005042.1 | 20686 | 9277-8108 | Solanum tuberosum DM8.1, SLF5-2 | 98.6 | F-box domain |
| SLF18 | JAJOOO010006792.1 | 12248 | 2252-3364 | Solanum tuberosum DM8.1, SLF18 | 96.3 | F-box domain |
| SLF19 | JAJOOO010006951.1 | 17807 | 4445-5560 | Solanum tuberosum DM8.1, SLF19 | 95.8 | F-box domain |
| SLF15 | JAJOOO010007794.1 | 76001 | 30011-28752 | Solanum tuberosum DM8.1, SLF15 | 97.5 | F-box domain |
| SLF16Ψ | JAJOOO010009956.1 | 26610 | 6860-5680 | Solanum tuberosum DM8.1, SLF16 | 98.2 | - |
| SLF20 | JAJOOO010012704.1 | 16772 | 6108-4942 | Solanum tuberosum DM8.1, SLF20 | 96.6 | F-box domain |
| SLF13 | JAJOOO010013331.1 | 9424 | 6210-7412 | Solanum tuberosum DM8.1, SLF13 | 98.1 | F-box domain |
| SLF5-2 | JAJOOO010014930.1 | 33868 | 2496-1312 | Solanum tuberosum DM8.1, SLF5 | 97.6 | F-box domain |
| SLF12Ψ | JAJOOO010014930.1 | 33868 | 28009-29175 | Solanum tuberosum DM8.1, SLF12 | 99.0 | - |
| S-RNase | JAJOOO010015400.1 | 46283 | 6351-6596,6711-7136 | Solanum chacoense AF232304.1, ScS14-RNase | 95.4 | F-box domain |
| S-RNase-2 | JAJOOO010019964.1 | 10893 | 5577-5344,5257-4844 | Solanum tuberosum MZ561415.1, SRNase-S12 | 94.9 | F-box domain |
| SLF12-2 | JAJOOO010020500.1 | 29492 | 9901-11064 | Solanum tuberosum DM8.1, SLF12 | 94.1 | F-box domain |
| SLF5-3 | JAJOOO010025768.1 | 20189 | 8625-7441 | Solanum tuberosum DM8.1, SLF5 | 96.2 | F-box domain |
| SLF23 | JAJOOO010027219.1 | 6250 | 3764-2607 | Solanum lycopersicoides KU960925.1, SLF23 | 95.8 | F-box domain |
| SLF7 | JAJOOO010027335.1 | 5780 | 4156-5325 | Solanum tuberosum DM8.1, SLF7 | 97.4 | F-box domain |
| SLF4 | JAJOOO010036332.1 | 15773 | 8492-7326 | Solanum pimpinellifolium KJ814871.1, SLF4 | 95.7 | F-box domain |
| SLF17 | JAJOOO010036698.1 | 6884 | 4031-5212 | Solanum tuberosum DM8.1, SLF17 | 97.4 | F-box domain |
| SLF12-3Ψ | JAJOOO010037487.1 | 3123 | 229-1378 | Solanum pennellii NM_001323464.1, SLF12 | 93.0 | - |
Downloads
The Solanum piurae S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Solanum_piurae |
Publications
NCBI BioProject PRJNA779368. Genome sequencing of Solanum genomes and the cold regulated transcriptome of a cold tolerant Solanum species.
Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Genome evolution and diversity of wild and cultivated potatoes. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x.