| Analysis Name | Solanum piurae pur1868 Assembly & Annotation |
| Sequencing technology | Illumina NovaSeq |
| Assembly method | MaSuRCA v. 4.0.5 |
| Release Date | 2023-04-04 |
No publication. NCBI BioProject PRJNA779368. Genome sequencing of Solanum genomes and the cold regulated transcriptome of a cold tolerant Solanum species.
Assembly statistics
| Genome size | 720.2 Mb |
| Number of contigs | 84,700 |
| Contig N50 | 23.7 kb |
| Contig L50 | 8,798 |
| Assembly level | Contig |
The Solanum piurae pur1868 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_029582685.1_pur1868_genomic.fna.gz |
The Solanum piurae pur1868 genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Solanum piurae pur1868 is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Contig | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF9Ψ | JAJOOO010000341.1 | 56428 | 38959-37816 | Solanum tuberosum DM8.1, SLF9 | 97.4 | - |
| SLF11 | JAJOOO010002568.1 | 23314 | 5466-6636 | Solanum tuberosum DM8.1, SLF11 | 96.2 | F-box domain |
| SLF21 | JAJOOO010002649.1 | 22195 | 19720-18500 | Solanum tuberosum DM8.1, SLF21 | 96.2 | F-box domain |
| SLF5 | JAJOOO010005042.1 | 20686 | 9277-8108 | Solanum tuberosum DM8.1, SLF5-2 | 98.6 | F-box domain |
| SLF18 | JAJOOO010006792.1 | 12248 | 2252-3364 | Solanum tuberosum DM8.1, SLF18 | 96.3 | F-box domain |
| SLF19 | JAJOOO010006951.1 | 17807 | 4445-5560 | Solanum tuberosum DM8.1, SLF19 | 95.8 | F-box domain |
| SLF15 | JAJOOO010007794.1 | 76001 | 30011-28752 | Solanum tuberosum DM8.1, SLF15 | 97.5 | F-box domain |
| SLF16Ψ | JAJOOO010009956.1 | 26610 | 6860-5680 | Solanum tuberosum DM8.1, SLF16 | 98.2 | - |
| SLF20 | JAJOOO010012704.1 | 16772 | 6108-4942 | Solanum tuberosum DM8.1, SLF20 | 96.6 | F-box domain |
| SLF13 | JAJOOO010013331.1 | 9424 | 6210-7412 | Solanum tuberosum DM8.1, SLF13 | 98.1 | F-box domain |
| SLF5-2 | JAJOOO010014930.1 | 33868 | 2496-1312 | Solanum tuberosum DM8.1, SLF5 | 97.6 | F-box domain |
| SLF12Ψ | JAJOOO010014930.1 | 33868 | 28009-29175 | Solanum tuberosum DM8.1, SLF12 | 99.0 | - |
| S-RNase | JAJOOO010015400.1 | 46283 | 6351-6596,6711-7136 | Solanum chacoense AF232304.1, ScS14-RNase | 95.4 | F-box domain |
| S-RNase-2 | JAJOOO010019964.1 | 10893 | 5577-5344,5257-4844 | Solanum tuberosum MZ561415.1, SRNase-S12 | 94.9 | F-box domain |
| SLF12-2 | JAJOOO010020500.1 | 29492 | 9901-11064 | Solanum tuberosum DM8.1, SLF12 | 94.1 | F-box domain |
| SLF5-3 | JAJOOO010025768.1 | 20189 | 8625-7441 | Solanum tuberosum DM8.1, SLF5 | 96.2 | F-box domain |
| SLF23 | JAJOOO010027219.1 | 6250 | 3764-2607 | Solanum lycopersicoides KU960925.1, SLF23 | 95.8 | F-box domain |
| SLF7 | JAJOOO010027335.1 | 5780 | 4156-5325 | Solanum tuberosum DM8.1, SLF7 | 97.4 | F-box domain |
| SLF4 | JAJOOO010036332.1 | 15773 | 8492-7326 | Solanum pimpinellifolium KJ814871.1, SLF4 | 95.7 | F-box domain |
| SLF17 | JAJOOO010036698.1 | 6884 | 4031-5212 | Solanum tuberosum DM8.1, SLF17 | 97.4 | F-box domain |
| SLF12-3Ψ | JAJOOO010037487.1 | 3123 | 229-1378 | Solanum pennellii NM_001323464.1, SLF12 | 93.0 | - |
Nucleotide
Protein