Solanum bulbocastanum SB22 Assembly & Annotation

Overview

Analysis Name Solanum bulbocastanum SB22 Assembly & Annotation
Sequencing technology PacBio RSII
Assembly method FALCON v. MAY-2019
Release Date 2024-01-04
Reference Publication(s)

No publication. NCBI BioProject PRJNA1003451. Solanum bulbocastanum isolate:PI 275187 | cultivar:wild Genome sequencing and assembly.

Assembly statistics

Genome size 656.4 Mb
Number of chromosomes 12
Number of scaffolds 406
Scaffold N50 51.2 Mb
Scaffold L50 6
Number of contigs 1,313
Contig N50 2.2 Mb
Contig L50 77
GC percent 34
Assembly level Chromosome

Assembly

The Solanum bulbocastanum SB22 Assembly file is available in FASTA format.

Downloads

Chromosomes (FASTA file) GCA_035048845.1_SB22_genomic.fna.gz

Gene Predictions

The Solanum bulbocastanum SB22 genome gene prediction files are not available.

Downloads

Genes (GFF3 file) -
CDS sequences (FASTA file) -
Protein sequences (FASTA file) -

Functional Analysis

Functional annotation for the Solanum bulbocastanum SB22 is not available.

Downloads

Domain from InterProScan -

S genes

Summary

QueryChromosomeSize(bp)CoordinatesBLASTn HitBLASTn %IDDomain
SLF16ΨJAVBHT010000001.12126290717043020-17044200Solanum tuberosum DM8.1, SLF1697.7-
SLF15ΨJAVBHT010000001.12126290718161562-18162825Solanum tuberosum DM8.1, SLF1593.6-
SLF15-2JAVBHT010000001.12126290718229313-18230572Solanum tuberosum DM8.1, SLF1595.7F-box domain
SLF18JAVBHT010000002.1261636514680274-4681386Solanum tuberosum DM8.1, SLF1895.5F-box domain
SLF19ΨJAVBHT010000002.1261636514716296-4715186Solanum tuberosum DM8.1, SLF1994.4-
SLF19-2ΨJAVBHT010000002.1261636515264823-5265938Solanum tuberosum DM8.1, SLF1995.3-
SLF3ΨJAVBHT010000002.12616365114926838-14925689Solanum pennellii BK009230.1, SLF392.4-
SLF20ΨJAVBHT010000002.12616365123575663-23576821Solanum tuberosum DM8.1, SLF2096.5-
SLF6ΨJAVBHT010000002.12616365123610636-23611779Solanum tuberosum DM8.1, SLF691.7-
SLF5ΨJAVBHT010000002.12616365123941339-23942506Solanum tuberosum DM8.1, SLF5-296.7-

Nucleotide

Protein

© 2023 National Genomics Data Center, China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences