Petunia axillaris
Overview
| Genus | Petunia |
| Species | axillaris |
| Common Name | Large white petunia, White moon petunia |
| Abbreviation | P. axillaris |
| Ploidy | Diploid |
| Chromosome Number | 2n=2x=14 |
| Genome Size | 1400 Mb |
| Genome Assemblies | 4 |
| Cross Reference | NCBI taxon: 33119 |
Organism Image
Description
Petunia axillaris, the large white petunia, wild white petunia or white moon petunia, is an annual herbaceous plant in the family Solanaceae, genus Petunia. It is native to temperate South America. The plant's flowers, the only white ones found in the Petunia genus, are 3 to 7 cm long. The commonly-grown garden petunia is a hybrid of P. axillaris and P. integrifolia.
Whole Genomes
Whole Genome Sequences & Annotations for Petunia axillaris
S genes
Petunia axillaris subsp. axillaris 'N (cultivar)' Peax403 S genes
| Query | Chromosome | Size(bp) | Coordinates | BLASTp Hit | BLASTp %ID | Domain |
| SLF1-1 | CM049421.1 | 156255816 | 127457386-127458555 | AGL76530, S5-SLF1 | 99 | F-box domain |
| SFL1-2 | CM049421.1 | 156255816 | 128296822-128295653 | ADD21612, S1-SLF1 | 99 | F-box domain |
| SLF2 | CM049421.1 | 156255816 | 118000713-118001879 | BAJ24857, S19-SLF2 | 95 | F-box domain |
| SLF3 | CM049421.1 | 156255816 | 127544332-127545489 | BAJ24858, S5-SLF3 | 98 | F-box domain |
| SLF4 | CM049421.1 | 156255816 | 124359456-124360667 | BAJ24865, S7-SLF4 | 94 | F-box domain |
| SLF5 | CM049421.1 | 156255816 | 117059536-117060705 | BAJ24871, S7-SLF5 | 95 | F-box domain |
| SLF6 | CM049421.1 | 156255816 | 117265699-117264521 | BAJ24881, S19-SLF6 | 96 | F-box domain |
| SLF8 | CM049421.1 | 156255816 | 127420965-127422140 | ABX82525, S2-SLF8 | 90 | F-box domain |
| SLF10 | CM049421.1 | 156255816 | 136581105-136582244 | BAQ19011, SLF10-S22 | 100 | F-box domain |
| SLF11 | CM049421.1 | 156255816 | 122951004-122949847 | BAQ18962, SLF11-S10 | 95 | F-box domain |
| SLF12 | CM049421.1 | 156255816 | 127479292-127480473 | AIK66457, S3-SLF12 | 99 | F-box domain |
| SLF13 | CM049421.1 | 156255816 | 127633471-127634634 | AIK66461, S2-SLF13 | 98 | F-box domain |
| SLF14 | CM049421.1 | 156255816 | 117175082-117176275 | AIK66466, S2-SLF14 | 98 | F-box domain |
| SLF15 | CM049421.1 | 156255816 | 127897883-127896690 | BAQ19016, SLF15-S22 | 99 | F-box domain |
| SLF16 | CM049421.1 | 156255816 | 126657295-126658455 | AIK66479, S6a-SLF16 | 99 | F-box domain |
| SLF18-1 | CM049421.1 | 156255816 | 124745350-124744208 | BAQ19002, S19-FBX2 | 84 | F-box domain |
| SLF18-2 | CM049421.1 | 156255816 | 123944057-123942879 | BAQ18968.1, SLF18-S10 | 100 | F-box domain |
| SLF19-1 | CM049421.1 | 156255816 | 124930094-124931254 | BAQ19002, S19-FBX2 | 80 | F-box domain |
| SLF19-2 | CM049421.1 | 156255816 | 125161084-125162244 | BAQ19002, S19-FBX2 | 80 | F-box domain |
| S-RNase | CM049421.1 | 156255816 | 136395439-136395675,136395794-136396225 | AAA60465, S1-RNase | 100 | Ribonuclease T2 family |
Petunia axillaris subsp. axillaris 'N (cultivar)' v1.6.2 S genes
| Query | Scaffold | Size(bp) | Coordinates | BLASTp Hit | BLASTp %ID | Domain |
| SLF1-1 | Peaxi162Scf00326 | 940666 | 508809-509978 | AGL76530, S5-SLF1 | 99 | F-box domain |
| SFL1-2 | Peaxi162Scf00715 | 718562 | 579572-578403 | ADD21612, S1-SLF1 | 99 | F-box domain |
| SLF2 | Peaxi162Scf00070 | 1471679 | 699640-700806 | BAJ24857, S19-SLF2 | 95 | F-box domain |
| SLF3 | Peaxi162Scf00326 | 940666 | 596118-597275 | BAJ24858, S5-SLF3 | 98 | F-box domain |
| SLF4 | Peaxi162Scf00671 | 726586 | 152315-153526 | BAJ24865, S7-SLF4 | 94 | F-box domain |
| SLF5 | Peaxi162Scf03085 | 28205 | 6171-7340 | BAJ24871, S7-SLF5 | 95 | F-box domain |
| SLF6 | Peaxi162Scf00172 | 1583766 | 619079-620257 | BAJ24881, S19-SLF6 | 96 | F-box domain |
| SLF8 | Peaxi162Scf00326 | 940666 | 464377-465552 | ABX82525, S2-SLF8 | 90 | F-box domain |
| SLF10 | Peaxi162Scf00336 | 1804933 | 636123-637262 | BAQ19011, SLF10-S22 | 100 | F-box domain |
| SLF11 | Peaxi162Scf00426 | 634794 | 185248-186405 | BAQ18962, SLF11-S10 | 95 | F-box domain |
| SLF12 | Peaxi162Scf00326 | 940666 | 531044-532225 | AIK66457, S3-SLF12 | 99 | F-box domain |
| SLF13 | Peaxi162Scf00326 | 940666 | 686239-687402 | AIK66461, S2-SLF13 | 98 | F-box domain |
| SLF14 | Peaxi162Scf00172 | 1583766 | 710039-708846 | AIK66466, S2-SLF14 | 98 | F-box domain |
| SLF15 | Peaxi162Scf01310 | 413452 | 332496-331303 | BAQ19016, SLF15-S22 | 99 | F-box domain |
| SLF16 | Peaxi162Scf01162 | 482111 | 154759-155919 | AIK66479, S6a-SLF16 | 99 | F-box domain |
| SLF18-1 | Peaxi162Scf00671 | 726586 | 550611-549469 | BAQ19002, S19-FBX2 | 84 | F-box domain |
| SLF18-2 | Peaxi162Scf00201 | 1576363 | 1309184-1308006 | BAQ18968, SLF18-S10 | 100 | F-box domain |
| SLF19-1 | Peaxi162Scf75437 | 1274 | 113-1273 | BAQ19002, S19-FBX2 | 80 | F-box domain |
| SLF19-2 | Peaxi162Scf01590 | 192725 | 31882-30722 | BAQ19002, S19-FBX2 | 80 | F-box domain |
| SLF20 | Peaxi162Scf01394 | 65038 | 63647-64564 | BAQ19002, S19-FBX2 | 80 | F-box domain |
| S-RNase | Peaxi162Scf00336 | 1804933 | 449266-449502,449621-450052 | AAA60465, S1-RNase | 100 | Ribonuclease T2 family |
Petunia axillaris subsp. axillaris 'P (cultivar)' ASM2999057v1 S genes
| Query | Contig | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF1 | JARKNS010000004.1 | 148221996 | 118501714-118500545 | AB933090, Sm-SLF1 | 99 | F-box domain |
| SFL2 | JARKNS010000004.1 | 148221996 | 99409232-99408078 | AB933091, Sm-SLF2 | 99 | F-box domain |
| SLF3 | JARKNS010000004.1 | 148221996 | 118190866-118189712 | AB933092, Sm-SLF3 | 99 | F-box domain |
| SLF5 | JARKNS010000004.1 | 148221996 | 101531044-101529878 | AB933093, Sm-SLF5 | 100 | F-box domain |
| SLF6 | JARKNS010000004.1 | 148221996 | 100385156-100386337 | AB933094, Sm-SLF6 | 100 | F-box domain |
| SLF7 | JARKNS010000004.1 | 148221996 | 120541983-120540805 | AB933095, Sm-SLF7 | 100 | F-box domain |
| SLF8 | JARKNS010000004.1 | 148221996 | 118626900-118625716 | AB933096, Sm-SLF8 | 99 | F-box domain |
| SLF9ψ | JARKNS010000004.1 | 148221996 | 104157593-104158753 | AB933098, SLF9-Sm | 97 | - |
| SLF9 | JARKNS010000004.1 | 148221996 | 117716418-117715258 | AB933098, SLF9-Sm | 100 | F-box domain |
| SLF10ψ | JARKNS010000004.1 | 148221996 | 129119594-129118424 | AB932991, SLF10-S9 | 99 | - |
| SLF11ψ | JARKNS010000004.1 | 148221996 | 110153925-110155080 | AB933007, SLF11-S10 | 94 | - |
| SLF11 | JARKNS010000004.1 | 148221996 | 118762463-118761291 | AB933100, Sm-SLF11 | 100 | F-box domain |
| SLF12 | JARKNS010000004.1 | 148221996 | 118476787-118475606 | AB933102, Sm-SLF12B | 99 | F-box domain |
| SLF13 | JARKNS010000004.1 | 148221996 | 118122822-118121656 | AB933103, Sm-SLF13 | 99 | F-box domain |
| SLF14 | JARKNS010000004.1 | 148221996 | 101155100-101153928 | AB933104, Sm-SLF14 | 100 | F-box domain |
| SLF15 | JARKNS010000004.1 | 148221996 | 120902776-120901586 | AB933105, Sm-SLF15 | 100 | F-box domain |
| SLF16 | JARKNS010000004.1 | 148221996 | 119666917-119668074 | AB933106, Sm-SLF16 | 100 | F-box domain |
| SLF18 | JARKNS010000004.1 | 148221996 | 109181121-109182299 | AB933013, SLF18-S10 | 100 | F-box domain |
| S-RNase | JARKNS010000004.1 | 148221996 | 129306142-129305906,129305787-129305356 | U07362, PhS1-RNase | 99 | Ribonuclease T2 family |
Petunia axillaris subsp. parodii 'S7 (cultivar)' IPS_Ppar_1.0 S genes
| Query | Scaffold | Size(bp) | Coordinates | BLASTp Hit | BLASTp %ID | Domain |
| SLF1 | JACAFL010065977.1 | 100304 | 65106-66275 | KC590092, S5-SLF1 | 99 | F-box domain |
| SLF2 | JACAFL010065213.1 | 38351 | 22866-24032 | AB568398, S19-SLF2 | 95 | F-box domain |
| SLF3 | JACAFL010061744.1 | 27785 | 26872-25715 | AB933002, SLF3-S10 | 98 | F-box domain |
| SLF4 | JACAFL010014271.1 | 38307 | 14411-13200 | KJ670477, S3-SLF4 | 95 | F-box domain |
| SLF5 | JACAFL010165928.1 | 3133 | 2382-1213 | AB933093, SLF5-Sm | 97 | F-box domain |
| SLF6 | JACAFL010030799.1 | 31099 | 24079-25257 | AB568422, S19-SLF6 | 97 | F-box domain |
| SLF9 | JACAFL010049681.1 | 43346 | 15178-16272 | AB933097, SLF9-Sm | 99 | F-box domain |
| SLF10 | JACAFL010009581.1 | 117804 | 100749-101852 | AB933099, Sm-SLF10 | 100 | F-box domain |
| SLF11 | JACAFL010008432.1 | 26340 | 25147-23990 | AB933007, SLF11-S10 | 96 | F-box domain |
| SLF13 | JACAFL010037339.1 | 18665 | 7897-9060 | KJ670440, S5-SLF13 | 98 | F-box domain |
| SLF14 | JACAFL010108454.1 | 16460 | 8423-7230 | KJ670446, S6a-SLF14 | 99 | F-box domain |
| SLF15 | JACAFL010118388.1 | 6475 | 1860-667 | AB933069, SLF15-S22 | 99 | F-box domain |
| SLF18-1 | JACAFL010027186.1 | 35597 | 9494-8316 | AB933013, SLF18-S10 | 100 | F-box domain |
| SLF18-2 | JACAFL010035308.1 | 226912 | 24194-23052 | AB933054, S19-FBX2 | 89 | F-box domain |
| S-RNase | JACAFL010002927.1 | 20629 | 1699-1935,2054-2485 | U07362, PhS1-RNase | 100 | Ribonuclease T2 family |
Downloads
The Petunia axillaris S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Petunia_axillaris |
Publications
Li, C., Binaghi, M., Pichon, V. et al. Tight genetic linkage of genes causing hybrid necrosis and pollinator isolation between young species. Nat. Plants 9, 420–432 (2023). https://doi.org/10.1038/s41477-023-01354-8.
Yarahmadov, T., Robinson, S., Hanemian, M., Pulver, V. & Kuhlemeier, C. Identification of transcription factors controlling floral morphology in wild Petunia species with contrasting pollination syndromes. Plant J. 104, 289–301 (2020). https://doi.org/10.1111/tpj.14962.
Bombarely, A., Moser, M., Amrad, A. et al. Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nature Plants 2, 16074 (2016). https://doi.org/10.1038/nplants.2016.74.
© 2023 National Genomics Data Center, China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences