| Analysis Name | Petunia axillaris subsp. axillaris 'P (cultivar)' ASM2999057v1 Assembly & Annotation |
| Sequencing technology | PacBio Sequel |
| Assembly method | Hifiasm v. 0.15 |
| Release Date | 2023-05-12 |
No publication. NCBI BioProject PRJNA858035.
Assembly statistics
| Genome size | 1.3G |
| Number of Contigs | 754 |
| Contig L50 | 4 |
| Contig N50 | 148.2Mb |
| Assembly level | Contig |
The Petunia axillaris subsp. axillaris 'P (cultivar)' ASM2999057v1 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | Petunia_axillaris_ASM2999057v1_genome.fasta.gz |
The Petunia axillaris subsp. axillaris 'P (cultivar)' ASM2999057v1 genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Petunia axillaris subsp. axillaris 'P (cultivar)' ASM2999057v1 is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Contig | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF1 | JARKNS010000004.1 | 148221996 | 118501714-118500545 | AB933090, Sm-SLF1 | 99 | F-box domain |
| SFL2 | JARKNS010000004.1 | 148221996 | 99409232-99408078 | AB933091, Sm-SLF2 | 99 | F-box domain |
| SLF3 | JARKNS010000004.1 | 148221996 | 118190866-118189712 | AB933092, Sm-SLF3 | 99 | F-box domain |
| SLF5 | JARKNS010000004.1 | 148221996 | 101531044-101529878 | AB933093, Sm-SLF5 | 100 | F-box domain |
| SLF6 | JARKNS010000004.1 | 148221996 | 100385156-100386337 | AB933094, Sm-SLF6 | 100 | F-box domain |
| SLF7 | JARKNS010000004.1 | 148221996 | 120541983-120540805 | AB933095, Sm-SLF7 | 100 | F-box domain |
| SLF8 | JARKNS010000004.1 | 148221996 | 118626900-118625716 | AB933096, Sm-SLF8 | 99 | F-box domain |
| SLF9ψ | JARKNS010000004.1 | 148221996 | 104157593-104158753 | AB933098, SLF9-Sm | 97 | - |
| SLF9 | JARKNS010000004.1 | 148221996 | 117716418-117715258 | AB933098, SLF9-Sm | 100 | F-box domain |
| SLF10ψ | JARKNS010000004.1 | 148221996 | 129119594-129118424 | AB932991, SLF10-S9 | 99 | - |
| SLF11ψ | JARKNS010000004.1 | 148221996 | 110153925-110155080 | AB933007, SLF11-S10 | 94 | - |
| SLF11 | JARKNS010000004.1 | 148221996 | 118762463-118761291 | AB933100, Sm-SLF11 | 100 | F-box domain |
| SLF12 | JARKNS010000004.1 | 148221996 | 118476787-118475606 | AB933102, Sm-SLF12B | 99 | F-box domain |
| SLF13 | JARKNS010000004.1 | 148221996 | 118122822-118121656 | AB933103, Sm-SLF13 | 99 | F-box domain |
| SLF14 | JARKNS010000004.1 | 148221996 | 101155100-101153928 | AB933104, Sm-SLF14 | 100 | F-box domain |
| SLF15 | JARKNS010000004.1 | 148221996 | 120902776-120901586 | AB933105, Sm-SLF15 | 100 | F-box domain |
| SLF16 | JARKNS010000004.1 | 148221996 | 119666917-119668074 | AB933106, Sm-SLF16 | 100 | F-box domain |
| SLF18 | JARKNS010000004.1 | 148221996 | 109181121-109182299 | AB933013, SLF18-S10 | 100 | F-box domain |
| S-RNase | JARKNS010000004.1 | 148221996 | 129306142-129305906,129305787-129305356 | U07362, PhS1-RNase | 99 | Ribonuclease T2 family |
Nucleotide
Protein