Description

Bitter orange, sour orange, Seville orange, bigarade orange, or marmalade orange is in a narrow sense the citrus tree Citrus x aurantium and its fruit. It is native to Southeast Asia and has been spread by humans to many parts of the world. It is probably a cross between the pomelo, Citrus maxima, and the mandarin orange, Citrus reticulata.

Whole Genomes

Whole Genome Sequences & Annotations for Citrus x aurantium

• Citrus x aurantium ZGSC

S genes

Citrus x aurantium ZGSC S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF13	CM101917.1	29023363	1134124-1133048	PP719853.1, S30-SLF13	98	F-box; F_box_assoc
SLF12	CM101917.1	29023363	1145471-1146592	PP719837.1, S2-SLF12	99	F-box; F_box_assoc
SLF11	CM101917.1	29023363	1149851-1151026	PP719851.1, S30-SLF11	98	F-box; F_box_assoc
SLF10	CM101917.1	29023363	1153500-1152355	PP719835.1, S2-SLF10	99	F-box; F_box_assoc
SLF9	CM101917.1	29023363	1174991-1173888	PP719834.1, S2-SLF9	74	F-box; F_box_assoc
SLF8	CM101917.1	29023363	1179056-1177920	PP719847.1, S30-SLF8a	75	F-box; F_box_assoc
SLF7	CM101917.1	29023363	1205437-1206567	PP719832.1, S2-SLF7	93	F-box; F_box_assoc
SLF5	CM101917.1	29023363	1267266-1266142	PP719830.1, S2-SLF5	90	F-box; F_box_assoc
SLF4	CM101917.1	29023363	1333840-1332719	PP719843.1, S30-SLF4	90	F-box; F_box_assoc
SLF3	CM101917.1	29023363	1360711-1359599	PP719842.1, S30-SLF3	90	F-box; F_box_assoc
SLF2	CM101917.1	29023363	1394792-1393698	PP719841.1, S30-SLF2	91	F-box; F_box_assoc
SLF1	CM101917.1	29023363	1333840-1332719	PP719826.1, S2-SLF1	79	F-box; F_box_assoc
S-RNase	CM101917.1	29023363	1285352-1285116,1284994-1284731	MN652912.1, Sm-RNase	99	RNase_T2
SLF1	CM101908.1	32509173	31232846-31233946	KR363148.1, SLF_S2C	100	F-box; F_box_assoc
SLF2	CM101908.1	32509173	31250090-31251205	PP719827.1, S2-SLF2	99	F-box; F_box_assoc
SLF3	CM101908.1	32509173	31256499-31257620	PP719828.1, S2-SLF3	99	F-box; F_box_assoc
SLF4	CM101908.1	32509173	31269979-31271082	PP719829.1, S2-SLF4	99	F-box; F_box_assoc
SLF5	CM101908.1	32509173	31288056-31286932	PP719830.1, S2-SLF5	99	F-box; F_box_assoc
SLF6	CM101908.1	32509173	31335625-31334492	PP719831.1, S2-SLF6	99	F-box; F_box_assoc
SLF7	CM101908.1	32509173	31341107-31339977	PP719832.1, S2-SLF7	99	F-box; F_box_assoc
SLF8	CM101908.1	32509173	31355516-31356661	PP719847.1, S30-SLF8a	74	F-box; F_box_assoc
SLF9	CM101908.1	32509173	31360814-31361953	PP719834.1, S2-SLF9	73	F-box; F_box_assoc
SLF10	CM101908.1	32509173	31383748-31384893	PP719835.1, S2-SLF10	99	F-box; F_box_assoc
SLF11	CM101908.1	32509173	31387339-31386164	PP719851.1, S30-SLF11	98	F-box; F_box_assoc
SLF12	CM101908.1	32509173	31391477-31390356	PP719837.1, S2-SLF12	99	F-box; F_box_assoc
SLF13	CM101908.1	32509173	31402818-31403894	PP719853.1, S30-SLF13	98	F-box; F_box_assoc
S-RNase	CM101908.1	32509173	31308861-31309115,31309208-31309651	MN652898.1, S2-RNase	100	RNase_T2

Downloads

The Citrus x aurantium S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Citrus_aurantium

Publications

NCBI BioProject PRJNA1199309, PRJNA1199314.

Zhang Y, Barthe G, Grosser JW, Wang N. Transcriptome analysis of root response to citrus blight based on the newly assembled Swingle citrumelo draft genome. BMC Genomics. 2016 Jul 8;17:485. doi: 10.1186/s12864-016-2779-y.