Description

Avena longiglumis is a species of monocot in the family Poaceae (grass family).

Whole Genomes

Whole Genome Sequences & Annotations for Avena longiglumis

• Avena longiglumis CN58138

S genes

Avena longiglumis CN58138 S genes

Query	Chromosome	Size(bp)	Coordinates	tBLASTn Hit	tBLASTn %ID	Domain
DUF247I-SΨ	chr1A	509477500	42350887-42350904	LpSDUF247-I_chromosome1	79	DUF247
DUF247II-SΨ	chr1A	509477500	42277229-42277483	LpSDUF247-II_chromosome1	74	DUF247
HPS10-S	chr1A	509477500	42346148-42346262, 42346386-42346522	LpsS_chromosome1	32	-
DUF247I-Z	chr2A	582703961	568479286-568480827	LpZDUF247-I_chromosome2	62	DUF247
DUF247II-Z	chr2A	582703961	568483044-568484651	LpZDUF247-II_chromosome2	51	DUF247
HPS10-Z	chr2A	582703961	568482454-568482557, 568482765-568482840	AatlanticaHPS10-Z	70	-

Downloads

The Avena longiglumis S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Avena_longiglumis

Publications

Kamal N, Tsardakas Renhuldt N, Bentzer J, Gundlach H, Haberer G, Juhász A, Lux T, Bose U, Tye-Din JA, Lang D, van Gessel N, Reski R, Fu YB, Spégel P, Ceplitis A, Himmelbach A, Waters AJ, Bekele WA, Colgrave ML, Hansson M, Stein N, Mayer KFX, Jellen EN, Maughan PJ, Tinker NA, Mascher M, Olsson O, Spannagl M, Sirijovski N. The mosaic oat genome gives insights into a uniquely healthy cereal crop. Nature. 2022 Jun;606(7912):113-119. doi: 10.1038/s41586-022-04732-y.

Peng Y, Yan H, Guo L, Deng C, Wang C, Wang Y, Kang L, Zhou P, Yu K, Dong X, Liu X, Sun Z, Peng Y, Zhao J, Deng D, Xu Y, Li Y, Jiang Q, Li Y, Wei L, Wang J, Ma J, Hao M, Li W, Kang H, Peng Z, Liu D, Jia J, Zheng Y, Ma T, Wei Y, Lu F, Ren C. Reference genome assemblies reveal the origin and evolution of allohexaploid oat. Nat Genet. 2022 Aug;54(8):1248-1258. doi: 10.1038/s41588-022-01127-7.

NCBI BioProject PRJEB45087. Chromosome-scale sequence assembly of Avena longiglumis accession CN58138.