| Analysis Name | Avena longiglumis CN58138 Assembly & Annotation |
| Sequencing technology | Pacbio, Illumina, Hi-C |
| Assembly method | Canu v1.9 |
| Release Date | 2022-09-22 |
No publication. NCBI BioProject PRJEB45087. Chromosome-scale sequence assembly of Avena longiglumis accession CN58138.
Assembly statistics
| Genome size | 7.4 Gb |
| Number of chromosomes | 7 |
| Number of scaffolds | 890 |
| Scaffold N50 | 217.1 Mb |
| Scaffold L50 | 8 |
| Number of contigs | 1,200 |
| Contig N50 | 42.6 Mb |
| Contig L50 | 52 |
| Assembly level | Chromosome |
The Avena longiglumis CN58138 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | Alongiglumis_CN58138_pseudomolecules.v1.fasta.gz |
The Avena longiglumis CN58138 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
| Genes (GFF3 file) | Alongiglumis_CN58138.v1.gff3.gz |
| CDS sequences (FASTA file) | Alongiglumis_CN58138.v1.cds.fa.gz |
| Protein sequences (FASTA file) | Alongiglumis_CN58138.v1.aa.fa.gz |
Functional annotation for the Avena longiglumis CN58138 is available for download below. The proteins were analyzed using InterProScan to assign InterPro domains(Pfam).
Downloads
| Domain from InterProScan | Avena_longiglumis.Pfam.tsv.gz |
Summary
| Query | Chromosome | Size(bp) | Coordinates | tBLASTn Hit | tBLASTn %ID | Domain |
| DUF247I-SΨ | chr1A | 509477500 | 42350887-42350904 | LpSDUF247-I_chromosome1 | 79 | DUF247 |
| DUF247II-SΨ | chr1A | 509477500 | 42277229-42277483 | LpSDUF247-II_chromosome1 | 74 | DUF247 |
| HPS10-S | chr1A | 509477500 | 42346148-42346262,42346386-42346522 | LpsS_chromosome1 | 32 | - |
| DUF247I-Z | chr2A | 582703961 | 568479286-568480827 | LpZDUF247-I_chromosome2 | 62 | DUF247 |
| DUF247II-Z | chr2A | 582703961 | 568483044-568484651 | LpZDUF247-II_chromosome2 | 51 | DUF247 |
| HPS10-Z | chr2A | 582703961 | 568482454-568482557,568482765-568482840 | AatlanticaHPS10-Z | 70 | - |
Nucleotide
Protein