Description

Avena insularis is a species of monocot in the family Poaceae (grass family).

Whole Genomes

Whole Genome Sequences & Annotations for Avena insularis

• Avena insularis BYU209

S genes

Avena insularis BYU209 S genes

Query	Chromosome	Size(bp)	Coordinates	tBLASTn Hit	tBLASTn %ID	Domain
DUF247I-S1	chr1D	464083788	389085557-389087155	LpSDUF247-I_chromosome1	80	DUF247
DUF247I-S2	chr3D	461076154	411813247-411814845	LpSDUF247-I_chromosome1	80	DUF247
DUF247II-S1Ψ	chr1D	464083788	388947102-388947599	LpSDUF247-II_chromosome1	75	DUF247
DUF247II-S2	chr3D	461076154	411896359-411897951	LpSDUF247-II_chromosome1	83	DUF247
HPS10-S1	chr1D	464083788	389084108-389084246, 389084330-389084466	LpsS_chromosome1	58	-
HPS10-S2	chr3D	461076154	411819706-411819842, 411819923-411820043	LpsS_chromosome1	65	-
DUF247I-ZΨ	chr2C	530843944	487317708-487319038	LpZDUF247-I_chromosome2	65	DUF247
DUF247II-Z1	chr2C	530843944	487321861-487323528	LpZDUF247-II_chromosome2	50	DUF247
DUF247II-Z2	chr2D	411577152	398385644-398387320	LpZDUF247-II_chromosome2	71	DUF247
HPS10-Z	chr2C	530843944	487320934-487321085, 487321127-487321262	AatlanticaHPS10-Z	85	-

Downloads

The Avena insularis S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Avena_insularis

Publications

Kamal N, Tsardakas Renhuldt N, Bentzer J, Gundlach H, Haberer G, Juhász A, Lux T, Bose U, Tye-Din JA, Lang D, van Gessel N, Reski R, Fu YB, Spégel P, Ceplitis A, Himmelbach A, Waters AJ, Bekele WA, Colgrave ML, Hansson M, Stein N, Mayer KFX, Jellen EN, Maughan PJ, Tinker NA, Mascher M, Olsson O, Spannagl M, Sirijovski N. The mosaic oat genome gives insights into a uniquely healthy cereal crop. Nature. 2022 Jun;606(7912):113-119. doi: 10.1038/s41586-022-04732-y.

Peng Y, Yan H, Guo L, Deng C, Wang C, Wang Y, Kang L, Zhou P, Yu K, Dong X, Liu X, Sun Z, Peng Y, Zhao J, Deng D, Xu Y, Li Y, Jiang Q, Li Y, Wei L, Wang J, Ma J, Hao M, Li W, Kang H, Peng Z, Liu D, Jia J, Zheng Y, Ma T, Wei Y, Lu F, Ren C. Reference genome assemblies reveal the origin and evolution of allohexaploid oat. Nat Genet. 2022 Aug;54(8):1248-1258. doi: 10.1038/s41588-022-01127-7.

NCBI BioProject PRJEB45088. Chromosome-scale sequence assembly of Avena insularis accession BYU209.