Avena eriantha

Overview

Genus Avena
Species eriantha
Common Name Oat (CC-genome)
Abbreviation A. eriantha
Ploidy Diploid
Chromosome Number 2n=2x=14
Genome Size 4170 Mb
Genome Assemblies 1
Cross Reference NCBI taxon: 146534

Description

Avena eriantha is a species of monocot in the family Poaceae (grass family).

Whole Genomes

Whole Genome Sequences & Annotations for Avena eriantha

S genes

Avena eriantha BYU132 S genes

QueryChromosomeSize(bp)CoordinatestBLASTn HittBLASTn %IDDomain
DUF247I-SDISΨChr5529955746386697325-386697771LpSDUF247-I_chromosome184DUF247
HPS10-SChr5529955746386701744-386701880,
386702004-386702118
LpsS_contig1294860-
DUF247I-ZΨChr745580308625998691-25999116AatlanticaDUF247I-Z97DUF247
HPS10-ZChr745580308625996885-25997076,
25997165-25997268
AatlanticaHPS10-Z97-

Downloads

The Avena eriantha S gene sequences are available in FASTA format.

CDS and Protein (FASTA file) S-gene_Avena_eriantha

Publications

Maughan PJ, Lee R, Walstead R, Vickerstaff RJ, Fogarty MC, Brouwer CR, Reid RR, Jay JJ, Bekele WA, Jackson EW, Tinker NA, Langdon T, Schlueter JA, Jellen EN. Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species. BMC Biol. 2019 Nov 22;17(1):92. doi: 10.1186/s12915-019-0712-y.

NCBI BioProject PRJEB45086. Chromosome-scale sequence assembly of Avena eriantha accession BYU132.

© 2023 National Genomics Data Center, China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences