Genus | Avena |
Species | eriantha |
Common Name | Oat (CC-genome) |
Abbreviation | A. eriantha |
Ploidy | Diploid |
Chromosome Number | 2n=2x=14 |
Genome Size | 4170 Mb |
Genome Assemblies | 1 |
Cross Reference | NCBI taxon: 146534 |
Avena eriantha is a species of monocot in the family Poaceae (grass family).
Avena eriantha BYU132 S genes
Query | Chromosome | Size(bp) | Coordinates | tBLASTn Hit | tBLASTn %ID | Domain |
DUF247I-SDISΨ | Chr5 | 529955746 | 386697325-386697771 | LpSDUF247-I_chromosome1 | 84 | DUF247 |
HPS10-S | Chr5 | 529955746 | 386701744-386701880,386702004-386702118 | LpsS_contig12948 | 60 | - |
DUF247I-ZΨ | Chr7 | 455803086 | 25998691-25999116 | AatlanticaDUF247I-Z | 97 | DUF247 |
HPS10-Z | Chr7 | 455803086 | 25996885-25997076,25997165-25997268 | AatlanticaHPS10-Z | 97 | - |
The Avena eriantha S gene sequences are available in FASTA format.
CDS and Protein (FASTA file) | S-gene_Avena_eriantha |
Maughan PJ, Lee R, Walstead R, Vickerstaff RJ, Fogarty MC, Brouwer CR, Reid RR, Jay JJ, Bekele WA, Jackson EW, Tinker NA, Langdon T, Schlueter JA, Jellen EN. Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species. BMC Biol. 2019 Nov 22;17(1):92. doi: 10.1186/s12915-019-0712-y.
NCBI BioProject PRJEB45086. Chromosome-scale sequence assembly of Avena eriantha accession BYU132.