| Analysis Name | Avena eriantha BYU132 Assembly & Annotation |
| Sequencing technology | Pacbio, Illumina, Hi-C |
| Assembly method | Canu v1.7 |
| Release Date | 2022-09-22 |
No publication. NCBI BioProject PRJEB45086. Chromosome-scale sequence assembly of Avena eriantha accession BYU132.
Assembly statistics
| Genome size | 3.8 Gb |
| Number of chromosomes | 7 |
| Number of scaffolds | 2,652 |
| Scaffold N50 | 534.8 Mb |
| Scaffold L50 | 4 |
| Number of contigs | 8,228 |
| Contig N50 | 1.3 Mb |
| Contig L50 | 838 |
| Assembly level | Chromosome |
The Avena eriantha BYU132 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | Avena_eriantha.faa.gz |
The Avena eriantha BYU132 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
| Genes (GFF3 file) | Avena_eriantha_gff.gz |
| CDS sequences (FASTA file) | Avena_eriantha_cds.fa.gz |
| Protein sequences (FASTA file) | Avena_eriantha_pep.fa.gz |
Functional annotation for the Avena eriantha BYU132 is available for download below. The proteins were analyzed using InterProScan to assign InterPro domains(Pfam).
Downloads
| Domain from InterProScan | Avena_eriantha.Pfam.tsv.gz |
Summary
| Query | Chromosome | Size(bp) | Coordinates | tBLASTn Hit | tBLASTn %ID | Domain |
| DUF247I-SDISΨ | Chr5 | 529955746 | 386697325-386697771 | LpSDUF247-I_chromosome1 | 84 | DUF247 |
| HPS10-S | Chr5 | 529955746 | 386701744-386701880,386702004-386702118 | LpsS_contig12948 | 60 | - |
| DUF247I-ZΨ | Chr7 | 455803086 | 25998691-25999116 | AatlanticaDUF247I-Z | 97 | DUF247 |
| HPS10-Z | Chr7 | 455803086 | 25996885-25997076,25997165-25997268 | AatlanticaHPS10-Z | 97 | - |
Nucleotide
Protein