| Genus | Avena |
| Species | atlantica |
| Common Name | Oat (AA-genome) |
| Abbreviation | A. atlantica |
| Ploidy | Diploid |
| Chromosome Number | 2n=2x=14 |
| Genome Size | 3720 Mb |
| Genome Assemblies | 1 |
| Cross Reference | NCBI taxon: 366594 |
Avena atlantica is a species of monocot in the family Poaceae (grass family).
Avena atlantica CC7277 S genes
| Query | Chromosome | Size(bp) | Coordinates | tBLASTn Hit | tBLASTn %ID | Domain |
| DUF247I-SΨ | AA2 | 542991241 | 44448026-44449063 | LpSDUF247-I_contig12948 | 79 | DUF247 |
| DUF247II-S | AA2 | 542991241 | 44324029-44325663 | LpSDUF247-II_chromosome1 | 74 | DUF247 |
| HPS10-S | AA2 | 542991241 | 44445580-44445703,44446008-44446102 | LrHPS10-S2 | 83 | - |
| DUF247I-Z | AA5 | 484002173 | 16625986-16627701 | LpZDUF247-I_P205C9H17P | 63 | DUF247 |
| DUF247II-ZΨ | AA5 | 484002173 | 16622693-16622938 | LpZDUF247-II_chromosome2 | 50 | DUF247 |
| HPS10-Z | AA5 | 484002173 | 16624449-16624524,16624732-16624835 | LpsZ_chromosome2_frame=1 | 51 | - |
The Avena atlantica S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Avena_atlantica |
Maughan PJ, Lee R, Walstead R, Vickerstaff RJ, Fogarty MC, Brouwer CR, Reid RR, Jay JJ, Bekele WA, Jackson EW, Tinker NA, Langdon T, Schlueter JA, Jellen EN. Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species. BMC Biol. 2019 Nov 22;17(1):92. doi: 10.1186/s12915-019-0712-y.
NCBI BioProject PRJEB45085. Chromosome-scale sequence assembly of Avena atlantica accession CC7277