Description

Arabidopsis thaliana, the thale cress, mouse-ear cress or arabidopsis, is a small plant from the mustard family (Brassicaceae), native to Eurasia and Africa. Commonly found along the shoulders of roads and in disturbed land, it is generally considered a weed.A winter annual with a relatively short lifecycle, A. thaliana is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of around 135 megabase pairs. It was the first plant to have its genome sequenced, and is an important tool for understanding the molecular biology of many plant traits, including flower development and light sensing.

Whole Genomes

Whole Genome Sequences & Annotations for Arabidopsis thaliana

• Arabidopsis thaliana Col-CC

S genes

Arabidopsis thaliana Col-CC S genes

Query	Chromosome	Size(bp)	Coordinates	BLASTp Hit	BLASTp %ID
SRK	CP116283.2	25768865	18562116-18560816,18560553-18560426,18560336-18560077	sp|P0DH87|PSRK_ARATH	98.01
SCR	CP116283.2	25768865	18557953-18558153	sp|P0CG07|SCRA_ARATH	63.64

Downloads

The Arabidopsis thaliana S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Arabidopsis_thaliana

Publications

NCBI BioProject PRJNA915353. Arabidopsis thaliana Genome sequencing.

Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature. 2000 Dec 14;408(6814):796-815. doi: 10.1038/35048692.

Michael TP, Jupe F, Bemm F, Motley ST, Sandoval JP, Lanz C, Loudet O, Weigel D, Ecker JR. High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nat Commun. 2018 Feb 7;9(1):541. doi: 10.1038/s41467-018-03016-2.

Jiao WB, Schneeberger K. Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics. Nat Commun. 2020 Feb 20;11(1):989. doi: 10.1038/s41467-020-14779-y.

Kang M, Wu H, Liu H, Liu W, Zhu M, Han Y, Liu W, Chen C, Song Y, Tan L, Yin K, Zhao Y, Yan Z, Lou S, Zan Y, Liu J. The pan-genome and local adaptation of Arabidopsis thaliana. Nat Commun. 2023 Oct 6;14(1):6259. doi: 10.1038/s41467-023-42029-4.