| Analysis Name | Arabidopsis thaliana Col-CC Assembly & Annotation |
| Sequencing technology | PacBio; Oxford Nanopore; Illumina |
| Assembly method | Consensus assembly of 13 independent assemblies v. Dec-2022 |
| Release Date | 2023-10-18 |
No publication. NCBI BioProject PRJNA915353. Arabidopsis thaliana Genome sequencing.
Assembly statistics
| Genome size | 142.5 Mb |
| Total ungapped length | 142.5 Mb |
| Number of chromosomes | 5 |
| Number of scaffolds | 5 |
| Scaffold N50 | 27.8 Mb |
| Scaffold L50 | 3 |
| Number of contigs | 5 |
| Contig N50 | 27.8 Mb |
| Contig L50 | 3 |
| GC percent | 37.5 |
| Genome coverage | 1000.0x |
| Assembly level | Complete Genome |
The Arabidopsis thaliana Col-CC Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_028009825.2_Col-CC_genomic.fna.gz |
The Arabidopsis thaliana Col-CC genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Arabidopsis thaliana Col-CC is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Chromosome | Size(bp) | Coordinates | BLASTp Hit | BLASTp %ID |
| SRK | CP116283.2 | 25768865 | 18562116-18560816,18560553-18560426,18560336-18560077 | sp|P0DH87|PSRK_ARATH | 98.01 |
| SCR | CP116283.2 | 25768865 | 18557953-18558153 | sp|P0CG07|SCRA_ARATH | 63.64 |
Nucleotide
Protein