Tubocapsicum anomalum
Overview
| Genus | Tubocapsicum |
| Species | anomalum |
| Common Name | Japanese wild pepper |
| Abbreviation | T. anomalum |
| Ploidy | - |
| Chromosome Number | n = 24 |
| Genome Size | 5020 Mb |
| Genome Assemblies | 1 |
| Cross Reference | NCBI taxon: 180580 |
Organism Image
Description
"Anomalum" means unusual, and it aptly describes this pepper plant, that can grow up to 1.2 m tall. The wild japanese pepper produces tiny round peppers that ripen into a brilliant red color fall, making it even harder to forget the plant.
Whole Genomes
Whole Genome Sequences & Annotations for Tubocapsicum anomalum
S genes
Tubocapsicum anomalum gwh_assembly 16CS11913 S genes
| Query | Chromosome | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF15 | GWHBKCL00000005 | 230414409 | 229769138-229770406 | Solanum tuberosum DM8.1, SLF15 | 85.5 | F-box domain |
| SLF16 | GWHBKCL00000014 | 199659125 | 188595375-188594173 | Solanum tuberosum DM8.1, SLF16 | 79.9 | F-box domain |
| SLF15-2 | GWHBKCL00000014 | 199659125 | 199184944-199186209 | Solanum tuberosum DM8.1, SLF15 | 84.4 | F-box domain |
| SLF18 | GWHBKCL00000016 | 196139964 | 12104882-12106009 | Solanum tuberosum DM8.1, SLF18-2 | 85.5 | F-box domain |
| SLF19 | GWHBKCL00000024 | 150247133 | 136456671-136455559 | Solanum tuberosum DM8.1, SLF19 | 89.3 | F-box domain |
Downloads
The Tubocapsicum anomalum S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Tubocapsicum_anomalum |
Publications
Wu Y, Li D, Hu Y, Li H, Ramstein GP, Zhou S, Zhang X, Bao Z, Zhang Y, Song B, Zhou Y, Zhou Y, Gagnon E, Särkinen T, Knapp S, Zhang C, Städler T, Buckler ES, Huang S. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023 May 25;186(11):2313-2328.e15. doi: 10.1016/j.cell.2023.04.008.