Solanum viarum
Overview
| Genus | Solanum |
| Species | viarum |
| Common Name | Tropical soda apple |
| Abbreviation | S. viarum |
| Ploidy | Diploid |
| Chromosome Number | 2n=2x=24 |
| Genome Size | 1150 Mb |
| Genome Assemblies | 2 |
| Cross Reference | NCBI taxon: 215581 |
Organism Image
Description
Solanum viarum, the tropical soda apple, is a perennial shrub native to Brazil and Argentina with a prickly stem and prickly leaves. The fruit is golf-ball-sized with the coloration of a watermelon. It is considered an invasive species in the lower eastern coastal states of the United States and recently on the Mid North Coast of Australia.
Whole Genomes
Whole Genome Sequences & Annotations for Solanum viarum
S genes
Solanum viarum gwh_assembly SCSB-HN-0080 S genes
| Query | Chromosome | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF15 | GWHCAXG00000001 | 119464842 | 3072729-3071464 | Solanum tuberosum DM8.1, SLF15 | 84.5 | F-box domain |
| SLF16Ψ | GWHCAXG00000001 | 119464842 | 3927989-3926821 | Solanum tuberosum DM8.1, SLF16 | 87.0 | - |
| SLF7 | GWHCAXG00000001 | 119464842 | 26764745-26765914 | Solanum tuberosum DM8.1, SLF7 | 89.2 | F-box domain |
| SLF23Ψ | GWHCAXG00000001 | 119464842 | 39976365-39977516 | Solanum lycopersicoides KU960925.1, SLF23 | 87.2 | - |
| SLF17Ψ | GWHCAXG00000001 | 119464842 | 40543241-40544410 | Solanum tuberosum DM8.1, SLF17 | 83.8 | - |
| SLF21Ψ | GWHCAXG00000001 | 119464842 | 52713211-52712182 | Solanum tuberosum DM8.1, SLF21 | 85.9 | - |
| SLF19Ψ | GWHCAXG00000001 | 119464842 | 75030601-75031707 | Solanum tuberosum DM8.1, SLF19 | 90.4 | - |
| SLF18 | GWHCAXG00000001 | 119464842 | 75147787-75146672 | Solanum tuberosum DM8.1, SLF18-2 | 87.0 | F-box domain |
Downloads
The Solanum viarum S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Solanum_viarum |
Publications
Wu Y, Li D, Hu Y, Li H, Ramstein GP, Zhou S, Zhang X, Bao Z, Zhang Y, Song B, Zhou Y, Zhou Y, Gagnon E, Särkinen T, Knapp S, Zhang C, Städler T, Buckler ES, Huang S. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023 May 25;186(11):2313-2328.e15. doi: 10.1016/j.cell.2023.04.008.