Solanum verrucosum
Overview
| Genus | Solanum |
| Species | verrucosum |
| Common Name | Papa morda |
| Abbreviation | S. verrucosum |
| Ploidy | Diploid (2x), Triploid (3x), Tetraploid (4x) |
| Chromosome Number | x=12 |
| Genome Size | 800 Mb |
| Genome Assemblies | 20 |
| Cross Reference | NCBI taxon: 315347 |
Organism Image
Description
Solanum verrucosum is a widespread species in Mexico, where it is primarily a plant of woodlands and cloud forests. Plants about 6 to 18 inches tall. Blue flowers. Round berries.
Whole Genomes
Whole Genome Sequences & Annotations for Solanum verrucosum
S genes
Solanum verrucosum '11H23 (Cultivar)' ASM3123040v1 S genes
| Query | Chromosome | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF15 | CP133612.1 | 84,109,000 | 3969487-3968225 | Solanum tuberosum DM8.1, SLF15 | 97.5 | F-box domain |
| SLF16Ψ | CP133612.1 | 84,109,000 | 5786801-5785621 | Solanum tuberosum DM8.1, SLF16 | 98.2 | - |
| SLF22Ψ | CP133612.1 | 84,109,000 | 34230216-34229099 | Solanum tuberosum DM8.1, SLF22 | 96.8 | - |
| SLF23 | CP133612.1 | 84,109,000 | 35128699-35129856 | Solanum lycopersicoides KU960925.1, SLF23 | 94.6 | F-box domain |
| SLF17 | CP133612.1 | 84,109,000 | 35206274-35207440 | Solanum tuberosum DM8.1, SLF17 | 97.8 | F-box domain |
| SLF12 | CP133612.1 | 84,109,000 | 35268421-35267255 | Solanum tuberosum DM8.1, SLF12 | 97.2 | F-box domain |
| SLF5 | CP133612.1 | 84,109,000 | 35276437-35277627 | Solanum tuberosum DM8.1, SLF5 | 95.7 | F-box domain |
| SLF12-2 | CP133612.1 | 84,109,000 | 37077345-37078511 | Solanum tuberosum DM8.1, SLF12 | 97.1 | F-box domain |
| SLF5-2 | CP133612.1 | 84,109,000 | 37408191-37407025 | Solanum tuberosum DM8.1, SLF5-2 | 98.4 | F-box domain |
| SLF7 | CP133612.1 | 84,109,000 | 37459350-37458181 | Solanum tuberosum DM8.1, SLF7 | 97.5 | F-box domain |
| SLF6Ψ | CP133612.1 | 84,109,000 | 37483495-37482349 | Solanum tuberosum DM8.1, SLF6 | 91.1 | - |
| SLF20 | CP133612.1 | 84,109,000 | 37538945-37537779 | Solanum tuberosum DM8.1, SLF20 | 99.5 | F-box domain |
| SLF21 | CP133612.1 | 84,109,000 | 38138141-38136921 | Solanum tuberosum DM8.1, SLF21 | 98.9 | F-box domain |
| SLF9 | CP133612.1 | 84,109,000 | 39802513-39803655 | Solanum tuberosum DM8.1, SLF9 | 97.6 | F-box domain |
| SLF2 | CP133612.1 | 84,109,000 | 43099985-43098798 | Solanum pennellii BK009231.1, SLF2 | 94.1 | F-box domain |
| SLF13 | CP133612.1 | 84,109,000 | 43100000-43098798 | Solanum tuberosum DM8.1, SLF13 | 99.3 | F-box domain |
| SLF18 | CP133612.1 | 84,109,000 | 55741159-55742274 | Solanum tuberosum DM8.1, SLF18 | 97.9 | F-box domain |
| SLF19 | CP133612.1 | 84,109,000 | 55773001-55771889 | Solanum tuberosum DM8.1, SLF19 | 96.7 | F-box domain |
Downloads
The Solanum verrucosum S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Solanum_verrucosum |
Publications
NCBI BioProject PRJNA820895. Wild potato species genome sequencing and assembly.
Hosaka AJ, Sanetomo R, Hosaka K. A de novo genome assembly of Solanum verrucosum Schlechtendal, a Mexican diploid species geographically isolated from other diploid A-genome species of potato relatives. G3 (Bethesda). 2022 Jul 29;12(8):jkac166. doi: 10.1093/g3journal/jkac166.
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