Description

Solanum torvum, also known as pendejera, turkey berry, devil's fig, pea eggplant, platebrush or susumber, is a bushy, erect and spiny perennial plant used horticulturally as a rootstock for eggplant. Grafted plants are very vigorous and tolerate diseases affecting the root system, thus allowing the crop to continue for a second year.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum torvum

• Solanum torvum gwh_assembly 07-88

S genes

Solanum torvum gwh_assembly 07-88 S genes

Query	Chromosome	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF19Ψ	GWHCAXF00000001	121444865	43367640-43366530	Solanum tuberosum DM8.1, SLF19	90.4	-
SLF18	GWHCAXF00000001	121444865	43743253-43742141	Solanum tuberosum DM8.1, SLF18-2	87.3	F-box domain
SLF7Ψ	GWHCAXF00000001	121444865	51376275-51375107	Solanum tuberosum DM8.1, SLF7	88.2	-
SLF13	GWHCAXF00000001	121444865	55396380-55397558	Solanum tuberosum DM8.1, SLF13	86.6	F-box domain
SLF5Ψ	GWHCAXF00000001	121444865	58752693-58751511	Solanum tuberosum DM8.1, SLF5-2	86.8	-
SLF4	GWHCAXF00000001	121444865	73591472-73590310	Solanum pimpinellifolium KJ814871.1, SLF4	85.4	F-box domain
SLF9Ψ	GWHCAXF00000001	121444865	77988517-77989627	Solanum tuberosum DM8.1, SLF9	84.2	-
SLF23	GWHCAXF00000001	121444865	82598779-82599930	Solanum lycopersicoides KU960925.1, SLF23	85.8	F-box domain
SLF21	GWHCAXF00000001	121444865	83680420-83679210	Solanum tuberosum DM8.1, SLF21	82.8	F-box domain
SLF16Ψ	GWHCAXF00000001	121444865	113875622-113876790	Solanum tuberosum DM8.1, SLF16	87.6	-
SLF15Ψ	GWHCAXF00000001	121444865	116032589-116031351	Solanum tuberosum DM8.1, SLF15	84.7	-

Downloads

The Solanum torvum S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_torvum

Publications

Wu Y, Li D, Hu Y, Li H, Ramstein GP, Zhou S, Zhang X, Bao Z, Zhang Y, Song B, Zhou Y, Zhou Y, Gagnon E, Särkinen T, Knapp S, Zhang C, Städler T, Buckler ES, Huang S. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023 May 25;186(11):2313-2328.e15. doi: 10.1016/j.cell.2023.04.008.

Zhang H, Chen H, Tan J, Huang S, Chen X, Dong H, Zhang R, Wang Y, Wang B, Xiao X, Hong Z, Zhang J, Hu J, Zhang M. The chromosome-scale reference genome and transcriptome analysis of Solanum torvum provides insights into resistance to root-knot nematodes. Front Plant Sci. 2023 Jul 17;14:1210513. doi: 10.3389/fpls.2023.1210513.