Description

The diploid plant, Solanum stenotomum (Sst), is believed to have an ancestral relationship with modern potato cultivars and be a potential source of resistance against disease.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum stenotomum

• Solanum stenotomum 'F172 (Isolate)' ASM1918654v1

S genes

Solanum stenotomum 'F172 (Isolate)' ASM1918654v1 S genes

Query	Chromosome	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF13	NC_064282.1	104650604	35349119-35350324	Solanum tuberosum DM8.1, SLF13	98.8	F-box domain
SLF11Ψ	NC_064282.1	104650604	37088682-37087533	Solanum tuberosum DM8.1, SLF11	93.9	-
SLF9	NC_064282.1	104650604	37939332-37940474	Solanum tuberosum DM8.1, SLF9	98.5	F-box domain
SLF21	NC_064282.1	104650604	39063296-39064516	Solanum tuberosum DM8.1, SLF21	98.5	F-box domain
S-RNase	NC_064282.1	104650604	39608518-39608291, 39608176-39607745	Solanum tuberosum MZ561408.1, SRNase-S5	88.8	Ribonuclease T2 family
SLF5	NC_064282.1	104650604	40407843-40406674	Solanum tuberosum DM8.1, SLF5-2	96.0	F-box domain
SLF7	NC_064282.1	104650604	40517286-40516114	Solanum tuberosum DM8.1, SLF7	93.9	F-box domain
SLF12	NC_064282.1	104650604	41507598-41506432	Solanum tuberosum DM8.1, SLF12	97.9	F-box domain
SLF5-2	NC_064282.1	104650604	41517844-41519034	Solanum tuberosum DM8.1, SLF5	95.9	F-box domain
SLF5-3Ψ	NC_064282.1	104650604	42110144-42111326	Solanum tuberosum DM8.1, SLF5-2	95.7	-
SLF4Ψ	NC_064282.1	104650604	42176077-42177241	Solanum pimpinellifolium KJ814871.1, SLF4	94.0	-
SLF6Ψ	NC_064282.1	104650604	42478344-42477205	Solanum tuberosum DM8.1, SLF6	91.8	-
SLF19Ψ	NC_064282.1	104650604	54613659-54614767	Solanum tuberosum DM8.1, SLF19	97.2	-
SLF18	NC_064282.1	104650604	54662328-54661213	Solanum tuberosum DM8.1, SLF18	97.4	F-box domain
SLF22	NC_064282.1	104650604	66318649-66317510	Solanum tuberosum DM8.1, SLF22	98.8	F-box domain
SLF23	NC_064282.1	104650604	67380803-67381960	Solanum neorickii MG266233.1, SLF23	94.4	F-box domain
SLF17	NC_064282.1	104650604	67452514-67453680	Solanum tuberosum DM8.1, SLF17	98.0	F-box domain
SLF16Ψ	NC_064282.1	104650604	95267648-95268828	Solanum tuberosum DM8.1, SLF16	98.2	-
SLF15	NC_064282.1	104650604	100652855-100654114	Solanum tuberosum DM8.1, SLF15	97.9	F-box domain

Downloads

The Solanum stenotomum S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_stenotomum

Publications

Yan L, Zhang Y, Cai G, Qing Y, Song J, Wang H, Tan X, Liu C, Yang M, Fang Z, Lai X. Genome assembly of primitive cultivated potato Solanum stenotomum provides insights into potato evolution. G3 (Bethesda). 2021 Sep 27;11(10):jkab262. doi: 10.1093/g3journal/jkab262