Description

Solanum spirale is a small fruiting shrub in the family Solanaceae, present in mid-elevation (500 to 1,900 m) paleotropical areas, in Southern China, India, Burma, Thailand, Laos, Vietnam, Indonesia and Australia (Queensland). It is widely cultivated in dooryard gardens in India, Thailand, and Laos and used for: food (cooked young leaves, raw or cooked berries) and medicine (roots used as a narcotic and diuretic in Assam; bark macerate used as a febrifuge in Laos).

Whole Genomes

Whole Genome Sequences & Annotations for Solanum spirale

• Solanum spirale gwh_assembly YDDXSA095

S genes

Solanum spirale gwh_assembly YDDXSA095 S genes

Query	Chromosome	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	GWHBKCG00000004	113673940	2858227-2859486	Solanum tuberosum DM8.1, SLF15	87.8	F-box domain
SLF16Ψ	GWHBKCG00000004	113673940	3680971-3679788	Solanum tuberosum DM8.1, SLF16	88.3	-
SLF5Ψ	GWHBKCG00000004	113673940	24859557-24858422	Solanum tuberosum DM8.1, SLF5-2	84.6	-
SLF7	GWHBKCG00000004	113673940	26140369-26139197	Solanum tuberosum DM8.1, SLF7	89.0	F-box domain
SLF13Ψ	GWHBKCG00000004	113673940	31018125-31016957	Solanum tuberosum DM8.1, SLF13	84.2	-
SLF18	GWHBKCG00000004	113673940	76744526-76745629	Solanum tuberosum DM8.1, SLF18-2	88.5	F-box domain
SLF18-2	GWHBKCG00000019	82306603	13962446-13961343	Solanum tuberosum DM8.1, SLF18-2	88.3	F-box domain
SLF18-3	GWHBKCG00000019	82306603	14004136-14003033	Solanum tuberosum DM8.1, SLF18-2	88.5	F-box domain
SLF23Ψ	GWHBKCG00000019	82306603	55235088-55236239	Solanum lycopersicoides KU960925.1, SLF23	85.6	-
SLF17	GWHBKCG00000019	82306603	55264576-55265733	Solanum tuberosum DM8.1, SLF17	82.9	F-box domain
SLF7-2Ψ	GWHBKCG00000019	82306603	57637260-57636087	Solanum tuberosum DM8.1, SLF7	88.9	-
SLF15-2	GWHBKCG00000019	82306603	77166026-77167285	Solanum tuberosum DM8.1, SLF15	87.7	F-box domain
SLF16-2Ψ	GWHBKCG00000019	82306603	79154993-79156175	Solanum tuberosum DM8.1, SLF16	87.9	-
SLF15-3	GWHBKCG00000019	82306603	79490674-79489415	Solanum tuberosum DM8.1, SLF15	87.7	F-box domain

Downloads

The Solanum spirale S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_spirale

Publications

Wu Y, Li D, Hu Y, Li H, Ramstein GP, Zhou S, Zhang X, Bao Z, Zhang Y, Song B, Zhou Y, Zhou Y, Gagnon E, Särkinen T, Knapp S, Zhang C, Städler T, Buckler ES, Huang S. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023 May 25;186(11):2313-2328.e15. doi: 10.1016/j.cell.2023.04.008.