Description

Solanum sogarandinum is a wild potato species native to central to northern Peru.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum sogarandinum

• Solanum sogarandinum PG4032

S genes

Solanum sogarandinum PG4032 S genes

Query	Contig	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF11Ψ	atg0029	1009984	578920-577755	Solanum tuberosum DM8.1, SLF11	95.1	-
SLF16Ψ	atg0106	4002564	378015-376827	Solanum tuberosum DM8.1, SLF16	98.2	F-box domain
SLF13	atg0217	1091949	116814-118016	Solanum tuberosum DM8.1, SLF13	96.7	F-box domain
SLF12Ψ	atg0217	1091949	407599-406438	Solanum chilense KJ814890.1, SLF12	92.3	-
SLF15	atg0988	66681	32036-33295	Solanum tuberosum DM8.1, SLF15	98.1	F-box domain
S-RNase	hptg0027	2807169	748306-748524, 748629-749057	Solanum peruvianum AB072467.1, SpS25-RNase	94.0	Ribonuclease T2 family
SLF21	hptg0027	2807169	1748893-1750116	Solanum tuberosum DM8.1, SLF21	91.4	F-box domain
SLF6	hptg0027	2807169	2212322-2213461	Solanum tuberosum DM8.1, SLF6-2	95.6	F-box domain
SLF1	hptg0058	5042497	330149-328968	Solanum pennellii KJ814858.1, SLF1	92.1	F-box domain
SLF23	hptg0058	5042497	700946-702115	Solanum lycopersicoides KU960925.1, SLF23	95.1	F-box domain
SLF17	hptg0058	5042497	766868-768049	Solanum tuberosum DM8.1, SLF17	98.1	F-box domain
SLF20	hptg0066	684579	555984-557150	Solanum tuberosum DM8.1, SLF20	96.7	F-box domain
SLF6-2	hptg0066	684579	609173-610282	Solanum tuberosum DM8.1, SLF6	90.8	F-box domain
SLF7	hptg0066	684579	622907-624070	Solanum tuberosum DM8.1, SLF7	95.4	F-box domain
SLF9	hptg0070	2528229	869879-871021	Solanum tuberosum DM8.1, SLF9	97.2	F-box domain
SLF5	hptg0073	557742	320987-319791	Solanum tuberosum DM8.1, SLF5	96.0	F-box domain
SLF12-2	hptg0073	557742	331912-333081	Solanum tuberosum DM8.1, SLF12	97.4	F-box domain
SLF4Ψ	hptg0073	557742	346672-345506	Solanum pimpinellifolium KJ814871.1, SLF4	94.7	-
SLF5-2	hptg0073	557742	489108-487939	Solanum tuberosum DM8.1, SLF5-2	96.5	F-box domain
SLF19	ptg0001	54574613	29227404-29228516	Solanum tuberosum DM8.1, SLF19	95.5	F-box domain
SLF18	ptg0001	54574613	29284559-29283441	Solanum tuberosum DM8.1, SLF18	97.3	F-box domain
SLF13-2	ptg0001	54574613	41791352-41792554	Solanum tuberosum DM8.1, SLF13	96.7	F-box domain
SLF12-3Ψ	ptg0001	54574613	42083115-42081954	Solanum chilense KJ814890.1, SLF12	92.3	-
SLF17-2	ptg0001	54574613	43170856-43169696	Solanum tuberosum DM8.1, SLF17	97.5	F-box domain
SLF6-3	ptg0001	54574613	43420042-43421184	Solanum tuberosum DM8.1, SLF6	93.2	F-box domain
S-RNase-2	ptg0001	54574613	43811423-43811656, 43811743-43812156	Solanum tuberosum MZ561415.1, SRNase-S12	94.5	Ribonuclease T2 family
SLF5-3	ptg0001	54574613	51508233-51507049	Solanum tuberosum DM8.1, SLF5	97.5	F-box domain
SLF12-4	ptg0001	54574613	51509552-51510718	Solanum tuberosum DM8.1, SLF12	97.8	F-box domain
SLF5-4	ptg0001	54574613	51949419-51948250	Solanum tuberosum DM8.1, SLF5-2	97.6	F-box domain
SLF7-2	ptg0001	54574613	52341431-52340265	Solanum tuberosum DM8.1, SLF7	95.0	F-box domain
SLF20-2	ptg0001	54574613	52452072-52450906	Solanum tuberosum DM8.1, SLF20	98.5	F-box domain
SLF21-2	ptg0001	54574613	52739296-52738076	Solanum tuberosum DM8.1, SLF21	97.0	F-box domain
SLF9-2	ptg0001	54574613	53714590-53713448	Solanum tuberosum DM8.1, SLF9	97.6	F-box domain
SLF16-2	ptg0040	29894605	25481878-25483092	Solanum tuberosum DM8.1, SLF16	98.2	F-box domain
SLF15-2	ptg0040	29894605	26691922-26693181	Solanum tuberosum DM8.1, SLF15	98.1	F-box domain
SLF11-2Ψ	ptg0047	1033983	564190-563025	Solanum tuberosum DM8.1, SLF11	95.1	-

Downloads

The Solanum sogarandinum S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_sogarandinum

Publications

Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Genome evolution and diversity of wild and cultivated potatoes. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x.