Description

Solanum sitiens is a self-incompatible wild relative of tomato, characterized by salt and drought-resistance traits, with the potential to contribute through breeding programmes to crop improvement in cultivated tomato. This species has a distinct morphology, classification and ecotype compared to other stress resistant wild tomato relatives such as S.pennellii and S.chilense.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum sitiens

• Solanum sitiens 'LA1974 (cultivar)' ASM1680187v1

S genes

Solanum sitiens 'LA1974 (cultivar)' ASM1680187v1 S genes

Query	Scaffold	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF11	JABWTJ01 0000016.1	4721200	1398330-1397158	Solanum pennellii NM_001323461.1, SLF11	97.5	F-box domain
SLF16	JABWTJ01 0000101.1	4371203	3439774-3440955	Solanum lycopersicum SL2.31, SLF16	96.7	F-box domain
SLF15	JABWTJ01 0000101.1	4371203	4009713-4010972	Solanum lycopersicum SL2.31, SLF15	95.6	F-box domain
SLF7	JABWTJ01 0000122.1	3524182	2100380-2101549	Solanum peruvianum KJ814851.1, SLF7	96.8	F-box domain
SLF6	JABWTJ01 0000122.1	3524182	2221175-2222320	Solanum lycopersicoides KU987626.1, SLF6	98.1	F-box domain
SLF5	JABWTJ01 0000122.1	3524182	2242634-2243803	Solanum chilense KJ814884.1, SLF5	97.9	F-box domain
SLF4	JABWTJ01 0000122.1	3524182	2268140-2269306	Solanum peruvianum KJ814848.1, SLF4	96.8	F-box domain
SLF2	JABWTJ01 0000137.1	1814728	233034-231847	Solanum pennellii BK009231.1, SLF2	98.1	F-box domain
SLF10Ψ	JABWTJ01 0000160.1	2138947	2023891-2025121	Solanum chilense KJ814888.1, SLF10	94.8	-
SLF5-2	JABWTJ01 0000168.1	2118087	57472-58659	Solanum lycopersicoides KU987627.2, SLF5	97.2	F-box domain
SLF17	JABWTJ01 0000199.1	2111152	569184-568003	Solanum lycopersicoides KU960921.1, SLF17	96.4	F-box domain
SLF22Ψ	JABWTJ01 0000209.1	1536909	854576-853450	Solanum lycopersicoides KU960924.1, SLF22	99.4	-
SLF9	JABWTJ01 0000219.1	1342457	621184-620039	Solanum lycopersicoides KU987631.1, SLF9	99.6	F-box domain
SLF21	JABWTJ01 0000251.1	1194399	321642-320332	Solanum lycopersicoides KU960923.1, SLF21	99.6	F-box domain
SLF6-2	JABWTJ01 0000251.1	1194399	808296-809441	Solanum lycopersicoides KU987626.1, SLF6	99.0	F-box domain
SLF5-3	JABWTJ01 0000251.1	1194399	837504-838673	Solanum chilense KJ814884.1, SLF5	97.7	F-box domain
SLF4-2	JABWTJ01 0000251.1	1194399	892061-893224	Solanum peruvianum KJ814848.1, SLF4	96.6	F-box domain
SLF2-2	JABWTJ01 0000251.1	1194399	1051318-1052505	Solanum habrochaites KJ814908.1, SLF2-S1	97.1	F-box domain
SLF20	JABWTJ01 0000322.1	979256	587603-588769	Solanum lycopersicoides KU960922.1, SLF20	99.5	F-box domain
SLF6-3	JABWTJ01 0000332.1	1277144	1075590-1076735	Solanum tuberosum DM8.1, SLF6	91.8	F-box domain
S-RNase	JABWTJ01 0000348.1	1340021	338583-338350, 338263-337850	Solanum tuberosum MZ561415.1, SRNase-S12	92.8	Ribonuclease T2 family
SLF22-2	JABWTJ01 0000382.1	1553066	393596-394729	Solanum lycopersicoides KU960924.1, SLF22	99.4	F-box domain
SLF3	JABWTJ01 0000442.1	957390	855517-856680	Solanum pennellii BK009230.1, SLF3	97.9	F-box domain
SLF18	JABWTJ01 0000458.1	665964	318027-319136	Solanum lycopersicum SL2.31, SLF18	95.4	F-box domain
SLF19	JABWTJ01 0000458.1	665964	358640-357531	Solanum lycopersicum SL2.31, SLF19	96.0	F-box domain
SLF1Ψ	JABWTJ01 0000490.1	623224	477117-475947	Solanum peruvianum KJ814846.1, SLF1	95.8	-
SLF17-2	JABWTJ01 0000745.1	705948	46693-47874	Solanum lycopersicoides KU960921.1, SLF17	97.8	F-box domain
SLF1-2	JABWTJ01 0000757.1	317718	185148-186302	Solanum peruvianum KJ814846.1, SLF1	94.8	F-box domain
SLF23	JABWTJ01 0000828.1	265193	102516-103673	Solanum lycopersicoides KU960925.1, SLF23	98.7	F-box domain
SLF7-2Ψ	JABWTJ01 0001027.1	161051	27713-26544	Solanum peruvianum KJ814851.1, SLF7	97.2	-
SLF20-2Ψ	JABWTJ01 0001043.1	153806	43558-42391	Solanum lycopersicoides KU960922.1, SLF20	99.8	-

Downloads

The Solanum sitiens S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_sitiens

Publications

Molitor C, Kurowski TJ, Fidalgo de Almeida PM, Eerolla P, Spindlow DJ, Kashyap SP, Singh B, Prasanna H, Thompson AJ, Mohareb FR. De Novo Genome Assembly Of Solanum Sitiens Reveals Structural Variation Associated With Drought And Salinity Tolerance. Bioinformatics. 2021 Jan 30;37(14):1941–5. doi: 10.1093/bioinformatics/btab048.