Solanum pseudocapsicum
Overview
| Genus | Solanum |
| Species | pseudocapsicum |
| Common Name | Jerusalem cherry, Madeira winter cherry |
| Abbreviation | S. pseudocapsicum |
| Ploidy | Diploid |
| Chromosome Number | 2n=2x=24 |
| Genome Size | 1160 Mb |
| Genome Assemblies | 1 |
| Cross Reference | NCBI taxon: 45837 |
Organism Image
Description
Solanum pseudocapsicum is a nightshade species with mildly poisonous fruit. It is commonly known as the Jerusalem cherry, Madeira winter cherry, or, ambiguously, "winter cherry". These perennials can be grown decoratively as house plants, but in some areas of South Africa, India, Australia and New Zealand it is regarded as a weed.
Whole Genomes
Whole Genome Sequences & Annotations for Solanum pseudocapsicum
S genes
Solanum pseudocapsicum gwh_assembly 323 S genes
| Query | Contig | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF7Ψ | GWHBKCA00000019 | 56199998 | 184262-185438 | Solanum tuberosum DM8.1, SLF7 | 88.5 | - |
| SLF21Ψ | GWHBKCA00000019 | 56199998 | 12723554-12724745 | Solanum tuberosum DM8.1, SLF21 | 84.4 | - |
| SLF18 | GWHBKCA00000019 | 56199998 | 41243553-41244656 | Solanum tuberosum DM8.1, SLF18-2 | 88.4 | F-box domain |
| SLF18-2 | GWHBKCA00000019 | 56199998 | 41261739-41262842 | Solanum tuberosum DM8.1, SLF18-2 | 88.5 | F-box domain |
| SLF16Ψ | GWHBKCA00000021 | 29224170 | 23565990-23567173 | Solanum tuberosum DM8.1, SLF16 | 88.6 | - |
| SLF15 | GWHBKCA00000021 | 29224170 | 24893530-24892271 | Solanum tuberosum DM8.1, SLF15 | 88.3 | F-box domain |
Downloads
The Solanum pseudocapsicum S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Solanum_pseudocapsicum |
Publications
Wu Y, Li D, Hu Y, Li H, Ramstein GP, Zhou S, Zhang X, Bao Z, Zhang Y, Song B, Zhou Y, Zhou Y, Gagnon E, Särkinen T, Knapp S, Zhang C, Städler T, Buckler ES, Huang S. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023 May 25;186(11):2313-2328.e15. doi: 10.1016/j.cell.2023.04.008.