Description

Solanum pinnatisectum, the tansy-leaf nightshade or tansyleaf nightshade, is a species of flowering plant in the family Solanaceae, native to Arizona in the United States, and to Mexico. A wild potato, it is being extensively studied for its resistance to Phytophthora infestans (the cause of late potato blight), in an effort to improve the domestic potato Solanum tuberosum.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum pinnatisectum

• Solanum pinnatisectum 'LQN (Isolate)' ASM3557808v1

S genes

Solanum pinnatisectum 'LQN (Isolate)' ASM3557808v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM069076.1	68,988,332	3033868-3032609	Solanum tuberosum DM8.1, SLF15	96.4	F-box domain
SLF15-2Ψ	CM069076.1	68,988,332	3101363-3100112	Solanum tuberosum DM8.1, SLF15	95.9	-
SLF16Ψ	CM069076.1	68,988,332	4158467-4157287	Solanum tuberosum DM8.1, SLF16	97.6	-
SLF6Ψ	CM069076.1	68,988,332	21244843-21245991	Solanum tuberosum DM8.1, SLF6-2	95.1	-
SLF9	CM069076.1	68,988,332	24759940-24761025	Solanum tuberosum DM8.1, SLF9	97.4	F-box domain
SLF4Ψ	CM069076.1	68,988,332	26314375-26313210	Solanum pimpinellifolium KJ814871.1, SLF4	92.8	-
SLF18	CM069076.1	68,988,332	40526508-40527620	Solanum tuberosum DM8.1, SLF18	95.4	F-box domain

Downloads

The Solanum pinnatisectum S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_pinnatisectum

Publications

NCBI BioProject PRJNA1030533. Solanum Pinnatisectum Genome sequencing.

Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Genome evolution and diversity of wild and cultivated potatoes. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x.