Description

Solanum pimpinellifolium, commonly known as the currant tomato or pimp, is a wild species of tomato native to Ecuador and Peru but naturalized elsewhere, such as the Galápagos Islands. Its small fruits are edible, and it is commonly grown in gardens as an heirloom tomato, although it is considered to be wild rather than domesticated as is the commonly cultivated tomato species Solanum lycopersicum. Its genome was sequenced in 2012.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum pimpinellifolium

• Solanum pimpinellifolium 'LA1589 (cultivar)' SDAU_Spim_LA1589_1.0

S genes

Solanum pimpinellifolium 'LA1589 (cultivar)' SDAU_Spim_LA1589_1.0 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	CM067864.1	96,767,464	2234711-2233452	Solanum lycopersicum SL2.31, SLF15	99.4	F-box domain
SLF16	CM067864.1	96,767,464	2803899-2802718	Solanum lycopersicum SL2.31, SLF16	99.7	F-box domain
SLF17	CM067864.1	96,767,464	46788999-46787914	Solanum lycopersicum SL2.31, SLF17	98.6	F-box domain
SLF23	CM067864.1	96,767,464	50393558-50392401	Solanum pimpinellifolium KU960927.1, SLF23	99.5	F-box domain
SLF21	CM067864.1	96,767,464	50701906-50703207	Solanum habrochaites KU960918.1, SLF21	98.0	F-box domain
SLF7Ψ	CM067864.1	96,767,464	51078884-51080053	Solanum pimpinellifolium KJ814874.1, SLF7	99.8	-
SLF1Ψ	CM067864.1	96,767,464	51861548-51860382	Solanum pimpinellifolium KJ814869.1, SLF1	99.9	-
SLF9	CM067864.1	96,767,464	53862902-53861838	Solanum lycopersicum NM_001329461.2, SLF9	98.9	F-box domain
SLF10Ψ	CM067864.1	96,767,464	54302745-54303976	Solanum pimpinellifolium KJ814876.1, SLF10	99.9	-
SLF11	CM067864.1	96,767,464	56124973-56126145	Solanum pimpinellifolium KJ814877.1, SLF11	100.0	F-box domain
SLF12	CM067864.1	96,767,464	57987958-57986795	Solanum pimpinellifolium KJ814878.1, SLF12	99.7	F-box domain
SLF13	CM067864.1	96,767,464	58823843-58822641	Solanum pimpinellifolium KJ814879.1, SLF13	100.0	F-box domain
SLF14Ψ	CM067864.1	96,767,464	62551614-62550449	Solanum lycopersicum KJ814903.1, SLF14	99.5	-
SLF18	CM067864.1	96,767,464	73745450-73746559	Solanum lycopersicum SL2.31, SLF18	99.6	F-box domain
SLF19	CM067864.1	96,767,464	73764558-73763449	Solanum lycopersicum SL2.31, SLF19	99.6	F-box domain

Downloads

The Solanum pimpinellifolium S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_pimpinellifolium

Publications

NCBI BioProject PRJNA1037188. Solanum pimpinellifolium cultivar:LA1589 Genome sequencing and assembly.

Tomato Genome Consortium. The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 2012 May 30;485(7400):635-41. doi: 10.1038/nature11119

Razali R, Bougouffa S, Morton MJL, Lightfoot DJ, Alam I, Essack M, Arold ST, Kamau AA, Schmöckel SM, Pailles Y, Shahid M, Michell CT, Al-Babili S, Ho YS, Tester M, Bajic VB, Negrão S. The Genome Sequence of the Wild Tomato Solanum pimpinellifolium Provides Insights Into Salinity Tolerance. Front Plant Sci. 2018 Oct 4;9:1402. doi: 10.3389/fpls.2018.01402.

Wang X, Gao L, Jiao C, Stravoravdis S, Hosmani PS, Saha S, Zhang J, Mainiero S, Strickler SR, Catala C, Martin GB, Mueller LA, Vrebalov J, Giovannoni JJ, Wu S, Fei Z. Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding. Nat Commun. 2020 Nov 16;11(1):5817. doi: 10.1038/s41467-020-19682-0.

Li N, He Q, Wang J, Wang B, Zhao J, Huang S, Yang T, Tang Y, Yang S, Aisimutuola P, Xu R, Hu J, Jia C, Ma K, Li Z, Jiang F, Gao J, Lan H, Zhou Y, Zhang X, Huang S, Fei Z, Wang H, Li H, Yu Q. Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species. Nat Genet. 2023 May;55(5):852-860. doi: 10.1038/s41588-023-01340-y.