Description

Solanum peruvianum (syn. Lycopersicon peruvianum) is a species of wild tomato in the family Solanaceae. It is native to the Galápagos Islands, Ecuador, Peru, and northern Chile, and has been introduced to California. Some authorities consider it to be a member (and namesake) of a species complex, with the other members being Solanum corneliomuelleri, Solanum huaylasense, and Solanum arcanum.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum peruvianum

• Solanum peruvianum 'ZY61 (cultivar)' ASM2770506v1

S genes

Solanum peruvianum 'ZY61 (cultivar)' ASM2770506v1 S genes

Query	Chr/Ctg	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF14Ψ	Contig00428	34019	32460-31293	Solanum pennellii BK009220.1, SLF14	98.5	-
SLF23	Contig00786	21931	11453-10296	Solanum pimpinellifolium KU960927.1, SLF23	99.1	F-box domain
SLF14-2Ψ	Contig01411	100219	54632-55800	Solanum pennellii BK009220.1, SLF14	98.1	-
SLF4Ψ	Contig01950	5116	66-1207	Solanum pimpinellifolium KJ814871.1, SLF4	94.0	-
S-RNase	Contig02195	46547	43731-43492, 43399-42974	Solanum lycopersicum XM_004229015.1, RNase1	97.5	F-box domain
SLF12Ψ	Contig02462	43990	24806-23679	Solanum lycopersicum SL2.31, SLF12	97.9	-
SLF17Ψ	Contig02941	78511	13298-12133	Solanum peruvianum KU960916.1, SLF17	99.8	-
SLF16	Sly01	95138171	1070181-1071362	Solanum lycopersicum SL2.31, SLF16	98.4	F-box domain
SLF15	Sly01	95138171	3597123-3595864	Solanum lycopersicum SL2.31, SLF15	95.3	F-box domain
SLF12-2Ψ	Sly01	95138171	33114506-33115633	Solanum lycopersicum SL2.31, SLF12	97.9	-
S-RNase-2	Sly01	95138171	42459508-42459269, 42459176-42458751	Solanum lycopersicum XM_004229015.1, RNase1	97.5	F-box domain
S-RNase-3	Sly01	95138171	42508818-42509057, 42509150-42509575	Solanum lycopersicum XM_004229015.1, RNase1	97.5	F-box domain
SLF11	Sly01	95138171	43395707-43394541	Solanum pennellii BK009223.1, SLF11	98.8	F-box domain
SLF5	Sly01	95138171	43540466-43539297	Solanum peruvianum KJ814849.1, SLF5	99.8	F-box domain
SLF6	Sly01	95138171	43549366-43548221	Solanum lycopersicum KJ814944.1, SLF6	99.1	F-box domain
SLF22Ψ	Sly01	95138171	47213956-47215088	Solanum pennellii BK009218.1, SLF22	98.9	-
S-RNase-4	Sly01	95138171	49532434-49532664, 49532756-49533169	Solanum peruvianum AB072464.1, S22-RNase	99.1	F-box domain
SLF2	Sly01	95138171	49922999-49921818	Solanum habrochaites KJ814908.1, SLF2-S1	98.5	F-box domain
SLF6-2Ψ	Sly01	95138171	49982874-49981746	Solanum peruvianum KJ814850.1, SLF6	97.7	-
SLF4-2	Sly01	95138171	51892677-51893843	Solanum pimpinellifolium KJ814871.1, SLF4	94.9	F-box domain
SLF5-2	Sly01	95138171	51978379-51977189	Solanum lycopersicoides KU987627.2, SLF5	90.4	F-box domain
SLF20	Sly01	95138171	52168034-52169200	Solanum peruvianum KU960913.1, SLF20	98.4	F-box domain
SLF7Ψ	Sly01	95138171	52410795-52411966	Solanum peruvianum KJ814851.1, SLF7	96.1	-
SLF20-2Ψ	Sly01	95138171	52733338-52734500	Solanum peruvianum KU960913.1, SLF20	98.0	-
SLF21Ψ	Sly01	95138171	53413859-53412554	Solanum peruvianum KU960914.1, SLF21	99.0	-
SLF9	Sly01	95138171	54201007-54199865	Solanum pimpinellifolium KJ814875.1, SLF9	98.9	F-box domain
SLF10Ψ	Sly01	95138171	54392002-54393228	Solanum chilense KJ814888.1, SLF10	98.1	-
SLF11-2	Sly01	95138171	57245409-57244237	Solanum peruvianum KJ814854.1, SLF11	99.1	F-box domain
SLF12-3	Sly01	95138171	57950950-57952113	Solanum peruvianum KJ814855.1, SLF12	99.1	F-box domain
SLF13	Sly01	95138171	59122409-59121207	Solanum peruvianum KJ814856.1, SLF13	99.9	F-box domain
SLF14-3Ψ	Sly01	95138171	62158350-62157169	Solanum chilense KJ814892.1, SLF14	99.9	-
SLF19	Sly01	95138171	72078110-72079219	Solanum lycopersicum SL2.31, SLF19	97.9	F-box domain
SLF18	Sly01	95138171	72097682-72096567	Solanum lycopersicum SL2.31, SLF18	98.7	F-box domain

Downloads

The Solanum peruvianum S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_peruvianum

Publications

Li N, He Q, Wang J, Wang B, Zhao J, Huang S, Yang T, Tang Y, Yang S, Aisimutuola P, Xu R, Hu J, Jia C, Ma K, Li Z, Jiang F, Gao J, Lan H, Zhou Y, Zhang X, Huang S, Fei Z, Wang H, Li H, Yu Q. Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species. Nat Genet. 2023 May;55(5):852-860. doi: 10.1038/s41588-023-01340-y.