Description

Solanum pennellii (syn. Lycopersicon pennellii) is a species of wild tomato in the family Solanaceae. It is native to the Galápagos Islands, Peru, and northern Chile. It is being extensively studied for its drought resistance and other traits in an effort to improve the cultivated tomato, Solanum lycopersicum.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum pennellii

• Solanum pennellii SPENNV200

S genes

Solanum pennellii SPENNV200 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	HG975440.1	109333515	2463138-2461879	Solanum lycopersicum SL2.31, SLF15	97.2	F-box domain
SLF16	HG975440.1	109333515	3048388-3047207	Solanum lycopersicum SL2.31, SLF16	98.7	F-box domain
SLF22	HG975440.1	109333515	55310065-55311198	Solanum pennellii BK009218.1, SLF22	100.0	F-box domain
SLF17	HG975440.1	109333515	57343380-57344561	Solanum pennellii BK009219.1, SLF17	100.0	F-box domain
SLF14	HG975440.1	109333515	57575058-57573889	Solanum pennellii BK009220.1, SLF14	100.0	F-box domain
SLF23	HG975440.1	109333515	57730925-57732082	Solanum pennellii BK009221.1, SLF23	100.0	F-box domain
SLF13	HG975440.1	109333515	59555089-59553908	Solanum pennellii BK009222.1, SLF13	100.0	F-box domain
SLF11	HG975440.1	109333515	59677718-59676552	Solanum pennellii BK009223.1, SLF11	100.0	F-box domain
SLF10	HG975440.1	109333515	59763510-59762341	Solanum pennellii BK009224.1, SLF10	100.0	F-box domain
SLF6Ψ	HG975440.1	109333515	59780871-59779727	Solanum pennellii KJ814862.1, SLF6	99.7	-
SLF8	HG975440.1	109333515	60199761-60198592	Solanum pennellii BK009225.1, SLF8	100.0	F-box domain
SLF20	HG975440.1	109333515	60360766-60359600	Solanum pennellii BK009226.1, SLF20	100.0	F-box domain
SLF21	HG975440.1	109333515	60586390-60585089	Solanum pennellii BK009227.1, SLF21	100.0	F-box domain
SLF6-2	HG975440.1	109333515	61822489-61821347	Solanum pennellii BK009228.1, SLF6	100.0	F-box domain
SLF10-2Ψ	HG975440.1	109333515	62275923-62277089	Solanum pennellii KJ814865.1, SLF10	99.8	-
SLF4	HG975440.1	109333515	63408490-63409662	Solanum pennellii BK009229.1, SLF4	100.0	F-box domain
SLF3	HG975440.1	109333515	65226205-65225042	Solanum pennellii BK009230.1, SLF3	100.0	F-box domain
SLF2	HG975440.1	109333515	65999303-65998116	Solanum pennellii BK009231.1, SLF2	100.0	F-box domain
SLF14-2Ψ	HG975440.1	109333515	70121818-70120636	Solanum chilense KJ814892.1, SLF14	97.0	-
SLF18	HG975440.1	109333515	85165871-85166986	Solanum lycopersicum SL2.31, SLF18	97.8	F-box domain
SLF19	HG975440.1	109333515	85196800-85195691	Solanum lycopersicum SL2.31, SLF19	97.9	F-box domain

Downloads

The Solanum pennellii S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_pennellii

Publications

Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, Ofner I, Vrebalov J, Xu Y, Osorio S, Aflitos SA, Schijlen E, Jiménez-Goméz JM, Ryngajllo M, Kimura S, Kumar R, Koenig D, Headland LR, Maloof JN, Sinha N, van Ham RC, Lankhorst RK, Mao L, Vogel A, Arsova B, Panstruga R, Fei Z, Rose JK, Zamir D, Carrari F, Giovannoni JJ, Weigel D, Usadel B, Fernie AR. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nat Genet. 2014 Sep;46(9):1034-8. doi: 10.1038/ng.3046.

Schmidt MH, Vogel A, Denton AK, Istace B, Wormit A, van de Geest H, Bolger ME, Alseekh S, Maß J, Pfaff C, Schurr U, Chetelat R, Maumus F, Aury JM, Koren S, Fernie AR, Zamir D, Bolger AM, Usadel B. De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing. Plant Cell. 2017 Oct;29(10):2336-2348. doi: 10.1105/tpc.17.00521.