Description

Solanum palustre (syn. Solanum brevidens) is a species of wild potato in the family Solanaceae. It is native to central and southern Chile, and Neuquén and Río Negro Provinces of Argentina. Although it does not bear tubers, it is still being extensively studied for its resistance to Potato virus Y, Potato leafroll virus, early blight, late blight, common scab, bacterial soft rot, and frost.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum palustre

• Solanum palustre PG0009

S genes

Solanum palustre PG0009 S genes

Query	Contig	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF12Ψ	PG0009_tig00003280	4768115	2721706-2722843	Solanum tuberosum DM8.1, SLF12	91.6	-
SLF5Ψ	PG0009_tig00003280	4768115	3085128-3084030	Solanum tuberosum DM8.1, SLF5-2	90.1	-
SLF5-2Ψ	PG0009_tig00003280	4768115	3150414-3149508	Solanum tuberosum DM8.1, SLF5-2	90.7	-
SLF11	PG0009_tig00004136	2945218	1295730-1296899	Solanum tuberosum DM8.1, SLF11	95.0	F-box domain
SLF18	PG0009_tig00004829	3532619	738644-739756	Solanum tuberosum DM8.1, SLF18	94.9	F-box domain
SLF19Ψ	PG0009_tig00004829	3532619	845864-844756	Solanum lycopersicum SL2.31, SLF19	94.0	-
SLF14Ψ	PG0009_tig00064968	7061184	2949188-2950311	Solanum habrochaites KJ814931.1, SLF14	86.4	-
SLF16Ψ	PG0009_tig00065185	362542	232098-233277	Solanum tuberosum DM8.1, SLF16	97.1	-
SLF15	PG0009_tig00065187	3120205	584788-583529	Solanum tuberosum DM8.1, SLF15	96.3	F-box domain

Downloads

The Solanum palustre S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_palustre

Publications

Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Genome evolution and diversity of wild and cultivated potatoes. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x.