Solanum ochranthum
Overview
| Genus | Solanum |
| Species | ochranthum |
| Common Name | None |
| Abbreviation | S. ochranthum |
| Ploidy | Diploid |
| Chromosome Number | 2n=2x=24 |
| Genome Size | 960 Mb |
| Genome Assemblies | 1 |
| Cross Reference | NCBI taxon: 154974 |
Organism Image
Description
Solanum ochranthum is most closely related to S. juglandifolium, and can be easily distinguished from the latter by the markedly paler undersurfaces of the leaves, the more numerous interjected leaflets and the rotate, usually more golden yellow corollas and acute calyx lobes.
Whole Genomes
Whole Genome Sequences & Annotations for Solanum ochranthum
S genes
Solanum ochranthum gwh_assembly PI 230519 01 S genes
| Query | Chr | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF15 | Chr_2 | 105267135 | 2439445-2438186 | Solanum lycopersicum SL2.31, SLF15 | 95.4 | F-box domain |
| SLF16 | Chr_2 | 105267135 | 3201498-3200317 | Solanum lycopersicum SL2.31, SLF16 | 96.1 | F-box domain |
| SLF22 | Chr_2 | 105267135 | 45597654-45596515 | Solanum lycopersicoides KU960924.1, SLF22 | 97.1 | F-box domain |
| SLF21 | Chr_2 | 105267135 | 51291299-51292606 | Solanum lycopersicoides KU960923.1, SLF21 | 97.7 | F-box domain |
| SLF20 | Chr_2 | 105267135 | 51869413-51870579 | Solanum lycopersicoides KU960922.1, SLF20 | 97.5 | F-box domain |
| SLF7 | Chr_2 | 105267135 | 51949635-51950807 | Solanum peruvianum KJ814851.1, SLF7 | 96.4 | F-box domain |
| S-RNase | Chr_2 | 105267135 | 52920462-52920689,52921304-52921732 | Solanum tuberosum MZ561417.1, SRNase-S14 | 91.6 | Ribonuclease T2 family |
| SLF12 | Chr_2 | 105267135 | 56444060-56442906 | Solanum tuberosum DM8.1, SLF12 | 93.2 | F-box domain |
| SLF5 | Chr_2 | 105267135 | 56640609-56641796 | Solanum tuberosum DM8.1, SLF5 | 94.0 | F-box domain |
| SLF5-2 | Chr_2 | 105267135 | 56996085-56997254 | Solanum chilense KJ814884.1, SLF5 | 96.6 | F-box domain |
| SLF4 | Chr_2 | 105267135 | 57010180-57011346 | Solanum pimpinellifolium KJ814871.1, SLF4 | 97.0 | F-box domain |
| SLF12-2Ψ | Chr_2 | 105267135 | 57094757-57093600 | Solanum tuberosum DM8.1, SLF12 | 93.3 | - |
| SLF5-3 | Chr_2 | 105267135 | 57185937-57187124 | Solanum lycopersicoides KU987627.2, SLF5 | 97.3 | F-box domain |
| SLF1 | Chr_2 | 105267135 | 58455162-58453987 | Solanum pennellii KJ814858.1, SLF1 | 95.2 | F-box domain |
| SLF23 | Chr_2 | 105267135 | 58477973-58479145 | Solanum lycopersicoides KU960925.1, SLF23 | 97.5 | F-box domain |
| SLF17 | Chr_2 | 105267135 | 58533236-58532055 | Solanum lycopersicoides KU960921.1, SLF17 | 96.6 | F-box domain |
| SLF11Ψ | Chr_2 | 105267135 | 61519056-61520218 | Solanum pennellii NM_001323461.1, SLF11 | 96.3 | - |
| SLF3Ψ | Chr_2 | 105267135 | 65414961-65416123 | Solanum pennellii BK009230.1, SLF3 | 97.4 | - |
| SLF13 | Chr_2 | 105267135 | 66096266-66095043 | Solanum pennellii NM_001323465.1, SLF13 | 98.8 | F-box domain |
| SLF14Ψ | Chr_2 | 105267135 | 68487249-68486083 | Solanum habrochaites KJ814931.1, SLF14 | 90.6 | - |
| SLF18 | Chr_2 | 105267135 | 79403256-79404371 | Solanum lycopersicum SL2.31, SLF18 | 95.3 | F-box domain |
Downloads
The Solanum ochranthum S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Solanum_ochranthum |
Publications
Wu Y, Li D, Hu Y, Li H, Ramstein GP, Zhou S, Zhang X, Bao Z, Zhang Y, Song B, Zhou Y, Zhou Y, Gagnon E, Särkinen T, Knapp S, Zhang C, Städler T, Buckler ES, Huang S. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023 May 25;186(11):2313-2328.e15. doi: 10.1016/j.cell.2023.04.008.