Description

This species and its closest relative, S. chmielewskii, are found in the mid-elevation valleys of the Andes mountains. It has very small flowers that are able to self-fertilize to produce green fruits with tiny seeds.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum neorickii

• Solanum neorickii 'ZY58 (cultivar)' ASM2770486v1

S genes

Solanum neorickii 'ZY58 (cultivar)' ASM2770486v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	Sly01	96012830	1630168-1628915	Solanum lycopersicum SL2.31, SLF15	98.1	F-box domain
SLF16	Sly01	96012830	1798582-1797401	Solanum lycopersicum SL2.31, SLF16	99.3	F-box domain
SLF22	Sly01	96012830	44727825-44726692	Solanum peruvianum KU987616.1, SLF22	99.6	F-box domain
S-RNase	Sly01	96012830	47155048-47155281, 47155362-47155772	Solanum neorickii MG266264.1, SRNase	100.0	Ribonuclease T2 family
SLF21	Sly01	96012830	51214535-51215836	Solanum peruvianum KU960914.1, SLF21	98.9	F-box domain
SLF20Ψ	Sly01	96012830	51847016-51848180	Solanum peruvianum KU960913.1, SLF20	98.2	-
SLF7Ψ	Sly01	96012830	51936597-51937737	Solanum lycopersicum SL2.31, SLF7	88.9	-
SLF7-2	Sly01	96012830	51955146-51956318	Solanum peruvianum KJ814851.1, SLF7	98.9	F-box domain
S-RNase-2	Sly01	96012830	52855155-52855364, 52855480-52855905	Solanum peruvianum Z26583.1, SpS6-RNase	99.1	Ribonuclease T2 family
SLF23	Sly01	96012830	53838360-53839517	Solanum neorickii MG266242.1, SLF23	99.7	F-box domain
SLF17Ψ	Sly01	96012830	53947452-53948633	Solanum peruvianum KU987615.1, SLF17	96.8	-
SLF9Ψ	Sly01	96012830	54939128-54937986	Solanum pimpinellifolium KJ814875.1, SLF9	98.3	-
SLF12	Sly01	96012830	58171405-58170242	Solanum pimpinellifolium KJ814878.1, SLF12	99.3	F-box domain
SLF13	Sly01	96012830	59070480-59069278	Solanum pimpinellifolium KJ814879.1, SLF13	98.9	F-box domain
SLF14Ψ	Sly01	96012830	62222481-62221312	Solanum lycopersicum KJ814903.1, SLF14	98.0	-
SLF18	Sly01	96012830	72785417-72786532	Solanum lycopersicum SL2.31, SLF18	98.9	F-box domain
SLF19	Sly01	96012830	72804295-72803186	Solanum lycopersicum SL2.31, SLF19	98.9	F-box domain

Downloads

The Solanum neorickii S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_neorickii

Publications

Li N, He Q, Wang J, Wang B, Zhao J, Huang S, Yang T, Tang Y, Yang S, Aisimutuola P, Xu R, Hu J, Jia C, Ma K, Li Z, Jiang F, Gao J, Lan H, Zhou Y, Zhang X, Huang S, Fei Z, Wang H, Li H, Yu Q. Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species. Nat Genet. 2023 May;55(5):852-860. doi: 10.1038/s41588-023-01340-y.