Solanum lyratum
Overview
| Genus | Solanum |
| Species | lyratum |
| Common Name | Lyreleaf nightshade |
| Abbreviation | S. lyratum |
| Ploidy | Diploid |
| Chromosome Number | 2n=2x=24 |
| Genome Size | 1110 Mb |
| Genome Assemblies | 4 |
| Cross Reference | NCBI taxon: 230192 |
Organism Image
Description
Solanum lyratum, the lyreleaf nightshade, is a species of flowering plant in the family Solanaceae, native to China, Taiwan, Vietnam, Cambodia, the Korean Peninsula, and Japan. Usually found in forests, it is also somewhat weedy and can be found on disturbed ground.
Whole Genomes
Whole Genome Sequences & Annotations for Solanum lyratum
S genes
Solanum lyratum gwh_assembly TangXS0506 S genes
| Query | Chr | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF19Ψ | GWHCAWX00000003 | 89828815 | 33654798-33655911 | Solanum lycopersicum SL2.31, SLF19 | 90.1 | - |
| SLF18 | GWHCAWX00000003 | 89828815 | 33669293-33668181 | Solanum tuberosum DM8.1, SLF18 | 90.1 | F-box domain |
| SLF16Ψ | GWHCAWX00000003 | 89828815 | 84650930-84652110 | Solanum tuberosum DM8.1, SLF16 | 90.8 | - |
| SLF15 | GWHCAWX00000003 | 89828815 | 89353411-89352152 | Solanum tuberosum DM8.1, SLF15 | 91.5 | F-box domain |
Downloads
The Solanum lyratum S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Solanum_lyratum |
Publications
Wu Y, Li D, Hu Y, Li H, Ramstein GP, Zhou S, Zhang X, Bao Z, Zhang Y, Song B, Zhou Y, Zhou Y, Gagnon E, Särkinen T, Knapp S, Zhang C, Städler T, Buckler ES, Huang S. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023 May 25;186(11):2313-2328.e15. doi: 10.1016/j.cell.2023.04.008.