Description

Solanum lycopersicoides is a wild nightshade relative of tomato with known resistance to a wide range of pests and pathogens, as well as tolerance to cold, drought and salt stress.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum lycopersicoides

• Solanum lycopersicoides ZY64 ASM2770504v1

S genes

Solanum lycopersicoides ZY64 ASM2770504v1 S genes

Query	Scaffold	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF5	JAKWJB01 0000210.1	111582	23278-22109	Solanum chilense KJ814884.1, SLF5	98.1	F-box domain
SLF6	JAKWJB01 0000210.1	111582	43436-42291	Solanum lycopersicoides KU987626.1, SLF6	98.9	F-box domain
SLF19	JAKWJB01 0000250.1	85999	8033-6924	Solanum lycopersicum SL2.31, SLF19	96.2	F-box domain
SLF10Ψ	JAKWJB01 0000285.1	81506	18076-19304	Solanum chilense KJ814888.1, SLF10	94.6	-
SLF3Ψ	JAKWJB01 0000846.1	81992	58326-59483	Solanum pennellii BK009230.1, SLF3	97.2	-
SLF11	JAKWJB01 0000974.1	100705	10888-9719	Solanum peruvianum KJ814846.1, SLF1	96.3	F-box domain
SLF15	JAKWJB01 0001164.1	135971647	3419543-3418284	Solanum lycopersicum SL2.31, SLF15	95.6	F-box domain
SLF16	JAKWJB01 0001164.1	135971647	3967616-3966435	Solanum lycopersicum SL2.31, SLF16	96.4	F-box domain
SLF23Ψ	JAKWJB01 0001164.1	135971647	58860502-58861658	Solanum lycopersicoides KU960925.1, SLF23	98.9	-
SLF5-2	JAKWJB01 0001164.1	135971647	73849360-73848173	Solanum lycopersicoides KU987627.2, SLF5	97.3	F-box domain
SLF4	JAKWJB01 0001164.1	135971647	73954796-73953630	Solanum peruvianum KJ814848.1, SLF4	97	F-box domain
SLF7Ψ	JAKWJB01 0001164.1	135971647	74076071-74074903	Solanum peruvianum KJ814851.1, SLF7	97	-
SLF6-2Ψ	JAKWJB01 0001164.1	135971647	74086192-74085087	Solanum tuberosum DM8.1, SLF6	90.2	-
SLF21Ψ	JAKWJB01 0001164.1	135971647	74462830-74464140	Solanum lycopersicoides KU960923.1, SLF21	99.4	-
SLF20Ψ	JAKWJB01 0001164.1	135971647	74855994-74857158	Solanum lycopersicoides KU960922.1, SLF20	99.7	-
SLF9Ψ	JAKWJB01 0001164.1	135971647	75656502-75655360	Solanum lycopersicoides KU987631.1, SLF9	99	-
SLF10-2Ψ	JAKWJB01 0001164.1	135971647	79658648-79657418	Solanum chilense KJ814888.1, SLF10	94.3	-
SLF11-2Ψ	JAKWJB01 0001164.1	135971647	83210579-83211750	Solanum pennellii NM_001323461.1, SLF11	97.4	-
SLF11-3Ψ	JAKWJB01 0001164.1	135971647	83265432-83264262	Solanum pennellii NM_001323461.1, SLF11	97.5	-
SLF3-2Ψ	JAKWJB01 0001164.1	135971647	85797952-85799113	Solanum pennellii BK009230.1, SLF3	97.8	-
SLF13	JAKWJB01 0001164.1	135971647	86547536-86546334	Solanum pennellii NM_001323465.1, SLF13	98.2	F-box domain
SLF18Ψ	JAKWJB01 0001164.1	135971647	104997980-104999093	Solanum lycopersicum SL2.31, SLF18	95.9	-
SLF19-2Ψ	JAKWJB01 0001164.1	135971647	105037649-105036548	Solanum lycopersicum SL2.31, SLF19	94	-

Downloads

The Solanum lycopersicoides S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_lycopersicoides

Publications

Powell AF, Feder A, Li J, Schmidt MH, Courtney L, Alseekh S, Jobson EM, Vogel A, Xu Y, Lyon D, Dumschott K, McHale M, Sulpice R, Bao K, Lal R, Duhan A, Hallab A, Denton AK, Bolger ME, Fernie AR, Hind SR, Mueller LA, Martin GB, Fei Z, Martin C, Giovannoni JJ, Strickler SR, Usadel B. A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity. Plant J. 2022 Jun;110(6):1791-1810. doi: 10.1111/tpj.15770

Li N, He Q, Wang J, Wang B, Zhao J, Huang S, Yang T, Tang Y, Yang S, Aisimutuola P, Xu R, Hu J, Jia C, Ma K, Li Z, Jiang F, Gao J, Lan H, Zhou Y, Zhang X, Huang S, Fei Z, Wang H, Li H, Yu Q. Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species. Nat Genet. 2023 May;55(5):852-860. doi: 10.1038/s41588-023-01340-y.