Description

Solanum lignicaule is a species with a small distribution in southern Peru.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum lignicaule

• Solanum lignicaule PG4017

S genes

Solanum lignicaule PG4017 S genes

Query	Contig	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF6Ψ	atg0043	1643348	64384-63252	Solanum tuberosum DM8.1, SLF6-2	97.2	-
SLF13	atg0043	1643348	571422-570220	Solanum tuberosum DM8.1, SLF13	99.3	F-box domain
SLF18	atg0044	5778565	641961-643079	Solanum tuberosum DM8.1, SLF18	97.3	F-box domain
SLF19Ψ	atg0044	5778565	676465-675351	Solanum lycopersicum SL2.31, SLF19	92	-
SLF16Ψ	atg0135	1585538	884219-885399	Solanum tuberosum DM8.1, SLF16	98.8	-
SLF11Ψ	atg0266	622045	91843-90691	Solanum tuberosum DM8.1, SLF11	94.3	-
SLF15	atg0489	715101	209664-210923	Solanum tuberosum DM8.1, SLF15	98.2	F-box domain
SLF22	hptg0022	6482982	392323-391184	Solanum tuberosum DM8.1, SLF22	99.5	F-box domain
SLF22-2	hptg0022	6482982	1158623-1159762	Solanum tuberosum DM8.1, SLF22	99.4	F-box domain
SLF22-3	hptg0022	6482982	2244808-2243657	Solanum tuberosum DM8.1, SLF22-2	96	F-box domain
SLF17	hptg0022	6482982	2953797-2952616	Solanum tuberosum DM8.1, SLF17	97.3	F-box domain
S-RNase	hptg0022	6482982	4432810-4432574, 4432486-4432073	Solanum chacoense S69589.1, ScS11-RNase	98.9	Ribonuclease T2 family
SLF5	hptg0022	6482982	5857094-5855910	Solanum tuberosum DM8.1, SLF5	97.4	F-box domain
SLF12	hptg0022	6482982	5862155-5863321	Solanum tuberosum DM8.1, SLF12	97.9	F-box domain
SLF5-2	hptg0022	6482982	6058113-6056944	Solanum tuberosum DM8.1, SLF5-2	97.9	F-box domain
SLF7	hptg0022	6482982	6302496-6301327	Solanum tuberosum DM8.1, SLF7	96	F-box domain
SLF20	hptg0022	6482982	6375446-6374280	Solanum tuberosum DM8.1, SLF20	97.7	F-box domain
SLF9Ψ	hptg0027	2150600	1113419-1112277	Solanum tuberosum DM8.1, SLF9	98.4	-
SLF21	hptg0052	550165	226259-227479	Solanum tuberosum DM8.1, SLF21	99.1	F-box domain
SLF22-4	hptg0118	751118	437212-438351	Solanum tuberosum DM8.1, SLF22	99	F-box domain
SLF15-2	ptg0006	25516111	4818941-4817682	Solanum tuberosum DM8.1, SLF15	97.5	F-box domain
SLF16-2Ψ	ptg0006	25516111	6559134-6557954	Solanum tuberosum DM8.1, SLF16	98.7	-
SLF6-2Ψ	ptg0008	43027691	622805-621665	Solanum tuberosum DM8.1, SLF6-2	97.5	-
SLF13-2	ptg0008	43027691	1100952-1099750	Solanum tuberosum DM8.1, SLF13	99.2	F-box domain
SLF18-2	ptg0008	43027691	13998381-13999499	Solanum tuberosum DM8.1, SLF18	97.4	F-box domain
SLF19-2Ψ	ptg0008	43027691	14032856-14031742	Solanum lycopersicum SL2.31, SLF19	92.1	-
SLF23	ptg0011	10769148	821209-822357	Solanum lycopersicoides KU960925.1, SLF23	95.3	F-box domain
SLF17-2	ptg0011	10769148	866559-867740	Solanum tuberosum DM8.1, SLF17	96.3	F-box domain
S-RNase-2	ptg0011	10769148	1907179-1907418, 1907523-1907948	Solanum tuberosum MZ561407.1, SRNase-S4	99	F-box domain
SLF5-3	ptg0011	10769148	6224584-6223394	Solanum tuberosum DM8.1, SLF5	97.1	F-box domain
SLF7-2	ptg0011	10769148	6251040-6252212	Solanum tuberosum DM8.1, SLF7	95.3	F-box domain
SLF5-4	ptg0011	10769148	6463174-6464343	Solanum tuberosum DM8.1, SLF5-2	98.6	F-box domain
SLF4	ptg0011	10769148	6665682-6666848	Solanum pimpinellifolium KJ814871.1, SLF4	95.4	F-box domain
SLF12-2	ptg0011	10769148	6877175-6876009	Solanum tuberosum DM8.1, SLF12	98.7	F-box domain
SLF20-2	ptg0011	10769148	6974293-6973127	Solanum tuberosum DM8.1, SLF20	97.9	F-box domain
SLF21-2	ptg0011	10769148	7439104-7437884	Solanum tuberosum DM8.1, SLF21	98.8	F-box domain
SLF9-2Ψ	ptg0011	10769148	8469249-8468108	Solanum tuberosum DM8.1, SLF9	97.8	-
SLF11-2Ψ	ptg0011	10769148	9872003-9873155	Solanum tuberosum DM8.1, SLF11	94.5	-

Downloads

The Solanum lignicaule S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_lignicaule

Publications

Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Genome evolution and diversity of wild and cultivated potatoes. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x.