| Analysis Name | Solanum dulcamara daSolDulc1.2 Assembly & Annotation |
| Sequencing technology | PacBio,Illumina,Arima |
| Assembly method | various |
| Release Date | 2022-12-02 |
No publication. NCBI BioProject PRJEB56942. Solanum dulcamara genome assembly, daSolDulc1.
Assembly statistics
| Genome size | 946.3 Mb |
| Number of chromosomes | 12 |
| Number of scaffolds | 105 |
| Scaffold N50 | 80 Mb |
| Scaffold L50 | 6 |
| Number of contigs | 143 |
| Contig N50 | 44.2 Mb |
| Contig L50 | 8 |
| Assembly level | Chromosome |
The Solanum dulcamara daSolDulc1.2 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_947179165.2_daSolDulc1.2_genomic.fna.gz |
The Solanum dulcamara daSolDulc1.2 genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Solanum dulcamara daSolDulc1.2 is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Chr | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF19Ψ | OX359255.1 | 82469251 | 33697057-33698168 | Solanum tuberosum DM8.1, SLF19 | 92.6 | - |
| SLF18 | OX359255.1 | 82469251 | 33718037-33716925 | Solanum tuberosum DM8.1, SLF18 | 89.6 | F-box domain |
| SLF7Ψ | OX359255.1 | 82469251 | 47491867-47493037 | Solanum tuberosum DM8.1, SLF7 | 89.6 | - |
| SLF16Ψ | OX359255.1 | 82469251 | 77562135-77563315 | Solanum tuberosum DM8.1, SLF16 | 90.3 | - |
| SLF15 | OX359255.1 | 82469251 | 81767651-81766392 | Solanum tuberosum DM8.1, SLF15 | 91 | F-box domain |
Nucleotide
Protein