Description

Solanum commersonii is a species of wild potato in the family Solanaceae. It is native to southern Brazil, Uruguay, and northeastern Argentina, and has been introduced to Mauritius. It is a crop wild relative useful in potato breeding for its resistance to root knot nematode, soft rot, blackleg, bacterial wilt (Ralstonia solanacearum), verticillium wilt, Potato virus X, tobacco etch virus, common scab, and late blight (caused by Phytophthora infestans), and for its frost tolerance and ability to cold acclimate.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum commersonii

• Solanum commersonii 'LZ3.2 (Isolate)' ASM1825827v1
• Solanum commersonii CM1.0

S genes

Solanum commersonii 'LZ3.2 (Isolate)' ASM1825827v1 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	Chr1	68122535	3996782-3995523	Solanum tuberosum DM8.1, SLF15	97.5	F-box domain
SLF16Ψ	Chr1	68122535	5556179-5554999	Solanum tuberosum DM8.1, SLF16	97.6	-
SLF17	Chr1	68122535	15224567-15223386	Solanum tuberosum DM8.1, SLF17	97.6	F-box domain
SLF17-2	Chr1	68122535	33750855-33749674	Solanum tuberosum DM8.1, SLF17	97.1	F-box domain
SLF23	Chr1	68122535	33801263-33800131	Solanum neorickii MG266239.1, SLF23	94.8	F-box domain
S-RNase	Chr1	68122535	34500418-34500645, 34500759-34501187	Solanum tuberosum MZ561417.1, SRNase-S14	98.6	Ribonuclease T2 family
SLF6	Chr1	68122535	34778438-34777293	Solanum lycopersicoides KU987626.1, SLF6	96	F-box domain
SLF12	Chr1	68122535	35796604-35797770	Solanum tuberosum DM8.1, SLF12	97.5	F-box domain
SLF5	Chr1	68122535	35961217-35960048	Solanum tuberosum DM8.1, SLF5-2	96.6	F-box domain
SLF5-2	Chr1	68122535	36419596-36420774	Solanum tuberosum DM8.1, SLF5	92.7	F-box domain
SLF22	Chr1	68122535	42716179-42715028	Solanum tuberosum DM8.1, SLF22-2	96.4	F-box domain
SLF21	Chr1	68122535	46796119-46797339	Solanum tuberosum DM8.1, SLF21	98.5	F-box domain
SLF6-2Ψ	Chr1	68122535	47448227-47447082	Solanum tuberosum DM8.1, SLF6	92.3	-
SLF20	Chr1	68122535	47517507-47516341	Solanum tuberosum DM8.1, SLF20	98.6	F-box domain
SLF20-2	Chr1	68122535	47611415-47612581	Solanum tuberosum DM8.1, SLF20	99.2	F-box domain
SLF6-3Ψ	Chr1	68122535	47638202-47639345	Solanum tuberosum DM8.1, SLF6	91.9	-
SLF7	Chr1	68122535	47662821-47663990	Solanum tuberosum DM8.1, SLF7	97.9	F-box domain
SLF5-3	Chr1	68122535	47700781-47701950	Solanum tuberosum DM8.1, SLF5-2	98.3	F-box domain
SLF9	Chr1	68122535	48649493-48650635	Solanum tuberosum DM8.1, SLF9	98.3	F-box domain
SLF11Ψ	Chr1	68122535	50659568-50660739	Solanum tuberosum DM8.1, SLF11	93.7	-
SLF3Ψ	Chr1	68122535	52429589-52430739	Solanum pennellii BK009230.1, SLF3	91.6	-
SLF13	Chr1	68122535	52859611-52858409	Solanum tuberosum DM8.1, SLF13	98.9	F-box domain

Solanum commersonii CM1.0 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
Hap1_SLF15	GWHESPT00000001	89804714	4110716-4109457	Solanum tuberosum DM8.1, SLF15	97.9	F-box domain
Hap1_SLF16	GWHESPT00000001	89804714	5360453-5359239	Solanum tuberosum DM8.1, SLF16	97.6	F-box domain
Hap1_SLF17	GWHESPT00000001	89804714	33174354-33173173	Solanum tuberosum DM8.1, SLF17	97.2	F-box domain
Hap1_SLF23	GWHESPT00000001	89804714	33187532-33186387	Solanum lycopersicoides KU960925.1, SLF23	95.1	F-box domain
Hap1_SLF5	GWHESPT00000001	89804714	37260285-37259101	Solanum tuberosum DM8.1, SLF5	97.6	F-box domain
Hap1_SLF12	GWHESPT00000001	89804714	37277110-37278276	Solanum tuberosum DM8.1, SLF12	98.6	F-box domain
Hap1_SLF5-2	GWHESPT00000001	89804714	37437339-37436170	Solanum tuberosum DM8.1, SLF5-2	98.6	F-box domain
Hap1_SLF7	GWHESPT00000001	89804714	37491844-37490675	Solanum tuberosum DM8.1, SLF7	97.9	F-box domain
Hap1_SLF20	GWHESPT00000001	89804714	37594917-37593751	Solanum tuberosum DM8.1, SLF20	99.3	F-box domain
Hap1_SLF21	GWHESPT00000001	89804714	38077718-38076498	Solanum tuberosum DM8.1, SLF21	98.6	F-box domain
Hap1_SLF3Ψ	GWHESPT00000001	89804714	44917765-44918915	Solanum pennellii BK009230.1, SLF3	91.7	-
Hap1_SLF13	GWHESPT00000001	89804714	45437857-45436661	Solanum tuberosum DM8.1, SLF13	98.0	F-box domain
Hap1_SLF18	GWHESPT00000001	89804714	59935414-59936529	Solanum tuberosum DM8.1, SLF18	97.1	F-box domain
Hap1_SLF19Ψ	GWHESPT00000001	89804714	59977320-59976210	Solanum tuberosum DM8.1, SLF19	95.9	-
Hap1_S-RNase	GWHESPT00000001	89804714	36399610-36399864, 36399969-36400397	Solanum chacoense CAA40216.1, S2-protein	80.5	Ribonuclease T2 family
Hap2_SLF15	GWHESPT00000013	93708594	3891103-3889844	Solanum tuberosum DM8.1, SLF15	97.9	F-box domain
Hap2_SLF16	GWHESPT00000013	93708594	5909247-5908033	Solanum tuberosum DM8.1, SLF16	97.6	F-box domain
Hap2_SLF9	GWHESPT00000013	93708594	37002326-37003468	Solanum tuberosum DM8.1, SLF9	98.0	F-box domain
Hap2_SLF21Ψ	GWHESPT00000013	93708594	38248906-38247688	Solanum tuberosum DM8.1, SLF21	97.1	-
Hap2_SLF5	GWHESPT00000013	93708594	39954424-39955593	Petunia axillaris AB568416.1, S19-SLF5	81.3	F-box domain
Hap2_SLF7Ψ	GWHESPT00000013	93708594	42848156-42849216	Solanum tuberosum DM8.1, SLF7	93.5	-
Hap2_SLF5-2	GWHESPT00000013	93708594	43202738-43203907	Solanum tuberosum DM8.1, SLF5-2	96.6	F-box domain
Hap2_SLF4Ψ	GWHESPT00000013	93708594	43350548-43351689	Solanum pimpinellifolium KJ814871.1, SLF4	94.4	-
Hap2_SLF12	GWHESPT00000013	93708594	43420026-43418860	Solanum tuberosum DM8.1, SLF12	97.3	F-box domain
Hap2_SLF5-3	GWHESPT00000013	93708594	43428818-43430008	Solanum tuberosum DM8.1, SLF5	96.2	F-box domain
Hap2_SLF17	GWHESPT00000013	93708594	45276602-45275421	Solanum tuberosum DM8.1, SLF17	97.2	F-box domain
Hap2_SLF23	GWHESPT00000013	93708594	45316753-45315605	Solanum neorickii MG266239.1, SLF23	94.8	F-box domain
Hap2_SLF1Ψ	GWHESPT00000013	93708594	45413562-45414702	Solanum peruvianum KJ814846.1, SLF1	90.0	-
Hap2_SLF11Ψ	GWHESPT00000013	93708594	45925337-45926438	Solanum tuberosum DM8.1, SLF11	93.2	-
Hap2_SLF6	GWHESPT00000013	93708594	47757043-47755892	Solanum tuberosum DM8.1, SLF6-2	96.5	F-box domain
Hap2_SLF3Ψ	GWHESPT00000013	93708594	47799814-47800950	Solanum pennellii BK009230.1, SLF3	90.5	-
Hap2_SLF13	GWHESPT00000013	93708594	48288406-48287204	Solanum tuberosum DM8.1, SLF13	98.2	F-box domain
Hap2_SLF18	GWHESPT00000013	93708594	63110582-63111697	Solanum tuberosum DM8.1, SLF18	97.5	F-box domain
Hap2_SLF19Ψ	GWHESPT00000013	93708594	63149146-63148036	Solanum tuberosum DM8.1, SLF19	95.9	-
Hap2_S-RNase	GWHESPT00000013	93708594	40499737-40499483, 40499342-40498914	Solanum tuberosum QYF06679.1, S-RNase 5	71.6	Ribonuclease T2 family

Downloads

The Solanum commersonii S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_commersonii

Publications

NCBI BioProject PRJNA655804. Solanum commersonii Genome sequencing and assembly.

Aversano R, Contaldi F, Ercolano MR, Grosso V, Iorizzo M, Tatino F, Xumerle L, Dal Molin A, Avanzato C, Ferrarini A, Delledonne M, Sanseverino W, Cigliano RA, Capella-Gutierrez S, Gabaldón T, Frusciante L, Bradeen JM, Carputo D. The Solanum commersonii Genome Sequence Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives. Plant Cell. 2015 Apr;27(4):954-68. doi: 10.1105/tpc.114.135954.

Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Genome evolution and diversity of wild and cultivated potatoes. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x.

Feng Y, Zhou J, Li D, Wang Z, Peng C, Zhu G. The haplotype-resolved T2T genome assembly of the wild potato species Solanum commersonii provides molecular insights into its freezing tolerance. Plant Commun. 2024 May 27:100980. doi: 10.1016/j.xplc.2024.100980.