Solanum chmielewskii

Overview

Genus Solanum
Species chmielewskii
Common Name -
Abbreviation S. chmielewskii
Ploidy Diploid
Chromosome Number 2n=2x=24
Genome Size 769 Mb
Genome Assemblies 1
Cross Reference NCBI taxon: 62889

Organism Image

Description

Solanum chmielewskii is sister to S. neorickii, and is difficult to distinguish from that species in the absence of flowers. Both species are related to S. arcanum, from northern Peru, rather than to S. lycopersicum and the other red-fruited species as was suggested by Rick et al. (1976). The flowers of S. chmielewskii are about twice the size of those of S. neorickii and the stigma is always exserted from the anther cone. The corolla tube tends to be slightly larger in diameter, with a more pentagonal corolla outline. Both species have uniform, short whitish pubescence, and small green fruits. Rick et al. (1976) suggested that the outcrossing S. chmielewskii gave rise to the autogamous S. neorickii in their area of sympatry in southern Peru (Dept. Apurimac), near the type localities for both species. Crosses between the two species usually resulted in low seed set (Rick et al. 1976), suggesting they have developed reproductive isolation, at least in their area of sympatry. Hybrids obtained were intermediate in size between the two parents. Solanum chmielewskii prefers drier, better-drained habitats than S. neorickii (Rick et al. 1976) and is found at somewhat higher elevations. The only Bolivian collection is from the Sorata Valley (Mandon 392) which is drier than other yungas valleys in Bolivia, and is the southern limit for other Solanaceae of dry habitats, such as Nicotiana glutinosa L.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum chmielewskii

S genes

Solanum chmielewskii 'ZY60 (cultivar)' ASM2770478v1 S genes

QueryChrSize(bp)CoordinatesBLASTn HitBLASTn %IDDomain
SLF15Chr01899563091540821-1539568Solanum lycopersicum SL2.31, SLF1597.9F-box domain
SLF16Chr01899563091852554-1851373Solanum lycopersicum SL2.31, SLF1699.4F-box domain
SLF22ΨChr018995630941546241-41545107Solanum peruvianum KU987616.1, SLF2299.3-
SLF9Chr018995630944070893-44072035Solanum pimpinellifolium KJ814875.1, SLF998.6F-box domain
SLF20Chr018995630945487210-45488376Solanum peruvianum KU960913.1, SLF2098F-box domain
SLF6Chr018995630946229641-46230786Solanum peruvianum KJ814850.1, SLF698.7F-box domain
SLF5Chr018995630946278081-46279250Solanum habrochaites KJ814915.1, SLF5-S196.1F-box domain
SLF4Chr018995630946358780-46359946Solanum pimpinellifolium KJ814871.1 SLF496.6F-box domain
SLF2ΨChr018995630946493419-46494445Solanum peruvianum KJ814847.1, SLF297.9-
S-RNaseChr018995630947927568-47927813,
47927928-47928353
Solanum peruvianum Z26581.1,
Sn-RNase
96.7Ribonuclease T2 family
SLF23Chr018995630949327980-49329137Solanum chmielewskii MG266249.1, SLF2399.9F-box domain
SLF17ΨChr018995630949565208-49566388Solanum peruvianum KU987615.1, SLF1796.1-
SLF1Chr018995630949914448-49915623Solanum pennellii KJ814858.1, SLF191.8F-box domain
SLF11Chr018995630950559343-50560515Solanum lycopersicoides KU987623.1, SLF1199.7F-box domain
SLF12Chr018995630951561523-51560360Solanum lycopersicoides KU987622.1, SLF1298.9F-box domain
SLF13ΨChr018995630952272953-52271751Solanum peruvianum KJ814856.1, SLF1398.8-
SLF14ΨChr018995630955634981-55633812Solanum lycopersicum KJ814903.1, SLF1498.5-
SLF18Chr018995630967098384-67099499Solanum lycopersicum SL2.31, SLF1899.1F-box domain
SLF19Chr018995630967116638-67115529Solanum lycopersicum SL2.31, SLF1998.9F-box domain

Downloads

The Solanum chmielewskii S gene sequences are available in FASTA format.

CDS and Protein (FASTA file) S-gene_Solanum_chmielewskii

Publications

Li N, He Q, Wang J, Wang B, Zhao J, Huang S, Yang T, Tang Y, Yang S, Aisimutuola P, Xu R, Hu J, Jia C, Ma K, Li Z, Jiang F, Gao J, Lan H, Zhou Y, Zhang X, Huang S, Fei Z, Wang H, Li H, Yu Q. Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species. Nat Genet. 2023 May;55(5):852-860. doi: 10.1038/s41588-023-01340-y.

© 2023 National Genomics Data Center, China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences