| Analysis Name | Solanum chilense 'LA1972 (cultivar)' ASM3284766v1 Assembly & Annotation |
| Sequencing technology | Illumina HiSeq; PacBio RSII; PacBio Sequel |
| Assembly method | MaSuRCA v. 3.2.7 |
| Release Date | 2023-10-20 |
No publication. NCBI BioProject PRJNA880259. Solanum chilense (LA1972) genome sequencing and assembly.
Assembly statistics
| Genome size | 901.3 Mb |
| Number of chromosomes | 12 |
| Number of scaffolds | 1,910 |
| Scaffold N50 | 72.3 Mb |
| Scaffold L50 | 6 |
| Number of contigs | 12,413 |
| Contig N50 | 164 kb |
| Contig L50 | 1,498 |
| Assembly level | Chromosome |
The Solanum chilense 'LA1972 (cultivar)' ASM3284766v1 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_032847665.1_ASM3284766v1_genomic.fna.gz |
The Solanum chilense 'LA1972 (cultivar)' ASM3284766v1 genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Solanum chilense 'LA1972 (cultivar)' ASM3284766v1 is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Chr | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF15 | Chr1 | 112267598 | 429411-430670 | Solanum lycopersicum SL2.31, SLF15 | 96 | F-box domain |
| SLF16 | Chr1 | 112267598 | 3197375-3196194 | Solanum lycopersicum SL2.31, SLF16 | 98.6 | F-box domain |
| SLF22 | Chr1 | 112267598 | 52197628-52196495 | Solanum pennellii BK009218.1, SLF22 | 98.9 | F-box domain |
| S-RNase | Chr1 | 112267598 | 53254187-53253954,53253872-53253462 | Solanum tuberosum MZ561405.1, SRNase-S2 | 93.2 | Ribonuclease T2 family |
| SLF1 | Chr1 | 112267598 | 53973803-53974972 | Solanum pennellii KJ814858.1, SLF1 | 95.6 | F-box domain |
| SLF17 | Chr1 | 112267598 | 57585624-57586805 | Solanum pimpinellifolium KU987617.1, SLF17 | 97.7 | F-box domain |
| SLF22-2Ψ | Chr1 | 112267598 | 58167250-58168401 | Solanum tuberosum DM8.1, SLF22-2 | 93.6 | - |
| SLF6 | Chr1 | 112267598 | 58298435-58299580 | Solanum peruvianum KJ814850.1, SLF6 | 98.6 | F-box domain |
| SLF5 | Chr1 | 112267598 | 58329322-58330491 | Solanum habrochaites KJ814915.1, SLF5-S1 | 96.2 | F-box domain |
| SLF4 | Chr1 | 112267598 | 58377381-58378547 | Solanum pimpinellifolium KJ814871.1, SLF4 | 96.8 | F-box domain |
| SLF2 | Chr1 | 112267598 | 58497540-58498727 | Solanum chilense KJ814882.1, SLF2 | 97.5 | F-box domain |
| SLF7 | Chr1 | 112267598 | 60463331-60462162 | Solanum habrochaites KJ814923.1, SLF7-S1 | 99 | F-box domain |
| SLF20 | Chr1 | 112267598 | 60537341-60536175 | Solanum peruvianum KU960913.1, SLF20 | 98.4 | F-box domain |
| SLF21 | Chr1 | 112267598 | 61050069-61048768 | Solanum peruvianum KU960914.1, SLF21 | 99 | F-box domain |
| SLF9 | Chr1 | 112267598 | 62050478-62049339 | Solanum pimpinellifolium KJ814875.1, SLF9 | 98.7 | F-box domain |
| SLF10Ψ | Chr1 | 112267598 | 62539617-62540846 | Solanum chilense KJ814888.1, SLF10 | 98.2 | - |
| SLF11 | Chr1 | 112267598 | 64562310-64563482 | Solanum pennellii NM_001323461.1, SLF11 | 99.5 | F-box domain |
| SLF12 | Chr1 | 112267598 | 66102357-66101194 | Solanum pennellii NM_001323464.1, SLF12 | 99.3 | F-box domain |
| SLF13 | Chr1 | 112267598 | 66796428-66795226 | Solanum chilense KJ814891.1, SLF13 | 99.7 | F-box domain |
| SLF14Ψ | Chr1 | 112267598 | 71191821-71190669 | Solanum pimpinellifolium KJ814880.1, SLF14 | 97.3 | - |
| SLF18 | Chr1 | 112267598 | 84980313-84981428 | Solanum lycopersicum SL2.31, SLF18 | 98.5 | F-box domain |
| SLF19 | Chr1 | 112267598 | 84998518-84997409 | Solanum lycopersicum SL2.31, SLF19 | 97.7 | F-box domain |
Nucleotide
Protein