Description

Solanum capsicoides, the cockroach berry, known as polohauai'i in Polynesia, is a flowering plant in the family Solanaceae. It is native to eastern Brazil but naturalized in other tropical regions, where it sometimes becomes an invasive weed.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum capsicoides

• Solanum capsicoides gwh_assembly YISR289

S genes

Solanum capsicoides gwh_assembly YISR289 S genes

Query	Scaffold	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF18Ψ	Sca_004	105935571	23002839-23001721	Solanum tuberosum DM8.1, SLF18-2	87.8	-
SLF5	Sca_004	105935571	55676489-55675325	Solanum tuberosum DM8.1, SLF5-2	87.5	F-box domain
SLF12Ψ	Sca_004	105935571	57688614-57689750	Solanum tuberosum DM8.1, SLF12	80.9	-
SLF14Ψ	Sca_004	105935571	61492781-61493982	Petunia inflata KJ670447.1, S12-SLF14	80.8	-
SLF11Ψ	Sca_004	105935571	61492809-61493982	Solanum tuberosum DM8.1, SLF11	87.8	-
SLF14-2Ψ	Sca_004	105935571	61492809-61493982	Petunia hybrida AB933104.1,Sm-SLF14	80.9	-
SLF9	Sca_004	105935571	65591428-65592582	Solanum tuberosum DM8.1, SLF9	82.3	F-box domain
SLF17	Sca_004	105935571	68323239-68324432	Solanum tuberosum DM8.1, SLF17	81.6	F-box domain
SLF21Ψ	Sca_004	105935571	71918795-71917581	Solanum tuberosum DM8.1, SLF21	85.6	-
SLF12-2Ψ	Sca_004	105935571	73344752-73345897	Solanum tuberosum DM8.1, SLF12	83.5	-
SLF2Ψ	Sca_004	105935571	75149638-75150808	Solanum peruvianum KJ814847.1,SLF2	81.2	-
SLF16	Sca_004	105935571	102187460-102188632	Solanum tuberosum DM8.1, SLF16	87.1	F-box domain
SLF15	Sca_004	105935571	103027919-103029184	Solanum tuberosum DM8.1, SLF15	84.4	F-box domain

Downloads

The Solanum capsicoides S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_capsicoides

Publications

Wu Y, Li D, Hu Y, Li H, Ramstein GP, Zhou S, Zhang X, Bao Z, Zhang Y, Song B, Zhou Y, Zhou Y, Gagnon E, Särkinen T, Knapp S, Zhang C, Städler T, Buckler ES, Huang S. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023 May 25;186(11):2313-2328.e15. doi: 10.1016/j.cell.2023.04.008.