Description

Solanum candolleanum is wild potato species native to Peru and Bolivia. Plants are fairly large, as much as three feet tall, although this is quite a variable species. Stolons reach almost five feet. Tubers are generally small, but can be among the largest of any of the wild potatoes, reaching up to about five inches long or more under cultivation. Flowers blue to purple. Berries round to ovoid and similar in size to domesticated potato. Grows in cool, moist environments up to about the 13,100 foot elevation.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum candolleanum

• Solanum candolleanum v1.0

S genes

Solanum candolleanum v1.0 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF16Ψ	chr01	74769255	5224141-5222961	Solanum tuberosum DM8.1, SLF16	99.2	-
SLF23	chr01	74769255	24675985-24677142	Solanum neorickii MG266233.1, SLF23	95.4	F-box domain
SLF17Ψ	chr01	74769255	24788659-24789839	Solanum tuberosum DM8.1, SLF17	97.5	-
S-RNase	chr01	74769255	26746728-26746970, 26747088-26747516	Solanum tuberosum X62727.1, StS2-RNase	100	Ribonuclease T2 family
SLF5	chr01	74769255	28135016-28133826	Solanum tuberosum DM8.1, SLF5	97.8	F-box domain
SLF5-2	chr01	74769255	30295683-30294493	Solanum tuberosum DM8.1, SLF5	96.3	F-box domain
SLF12	chr01	74769255	30305719-30306888	Solanum tuberosum DM8.1, SLF12	97.1	F-box domain
SLF23-2	chr01	74769255	30352544-30353692	Solanum lycopersicoides KU960925.1, SLF23	94.6	F-box domain
SLF17-2	chr01	74769255	30364442-30365623	Solanum tuberosum DM8.1, SLF17	97.4	F-box domain
SLF1Ψ	chr01	74769255	30432990-30434172	Solanum pennellii KJ814858.1, SLF1	92	-
SLF5-3	chr01	74769255	31683709-31682543	Solanum tuberosum DM8.1, SLF5-2	95.4	F-box domain
S-RNase-2	chr01	74769255	33313463-33313221, 33313106-33312681	Solanum peruvianum Z26581.1, Sn-Rnase	92	Ribonuclease T2 family
SLF7Ψ	chr01	74769255	33497772-33496600	Solanum tuberosum DM8.1, SLF7	96.8	-
SLF20	chr01	74769255	33525091-33523925	Solanum tuberosum DM8.1, SLF20	97.5	F-box domain
SLF21	chr01	74769255	33900506-33899286	Solanum tuberosum DM8.1, SLF21	99.1	F-box domain
SLF9	chr01	74769255	34422626-34421484	Solanum tuberosum DM8.1, SLF9	99.7	F-box domain
SLF11	chr01	74769255	35643745-35642576	Solanum tuberosum DM8.1, SLF11	95.5	F-box domain
SLF13	chr01	74769255	36496134-36494932	Solanum tuberosum DM8.1, SLF13	99.6	F-box domain
SLF19	chr01	74769255	46734248-46733136	Solanum tuberosum DM8.1, SLF19	98.3	F-box domain

Downloads

The Solanum candolleanum S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_candolleanum

Publications

Potato Genomics Resource. The Buell Lab at the University of Georgia is pleased to make available a long-read chromosome-scale genome assembly and genome annotation (v1.0) for Solanum candolleanum.

Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Genome evolution and diversity of wild and cultivated potatoes. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x.