Description

Solanum cajamarquense is an unusual species, with a small distribution in northern Peru. It grows at mid-elevations of the Andes from about 6500 to 8500 feet. Plants roughly 16 to 20 inches tall. Foliage and stems are extremely pubescent. Stolons long, exceeding two feet. Tubers small and moniliform, like beads on a string. Flowers white. Berries small, less than 1/2 inch, round to slightly compressed, green, some speckled or striped (or both).

Whole Genomes

Whole Genome Sequences & Annotations for Solanum cajamarquense

• Solanum cajamarquense PG6242

S genes

Solanum cajamarquense PG6242 S genes

Query	Contig	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF10Ψ	atg0218	376542	29785-28589	Solanum chilense KJ814888.1, SLF10	91.1	-
SLF9Ψ	atg0608	547624	67974-66833	Solanum tuberosum DM8.1, SLF9	97.6	-
SLF21	atg0640	1013887	745623-746843	Solanum tuberosum DM8.1, SLF21	96.5	F-box domain
SLF5	atg0674	512392	244035-242845	Solanum tuberosum DM8.1, SLF5	96.1	F-box domain
SLF12	atg0674	512392	273776-274942	Solanum tuberosum DM8.1, SLF12	98.6	F-box domain
SLF4	atg0674	512392	495434-494268	Solanum pimpinellifolium KJ814871.1, SLF4	96.4	F-box domain
SLF19	atg0818	764564	91815-92930	Solanum tuberosum DM8.1, SLF19	96	F-box domain
SLF18	atg0818	764564	117714-116599	Solanum tuberosum DM8.1, SLF18	96.3	F-box domain
SLF6Ψ	atg1051	719671	64899-63758	Solanum tuberosum DM8.1, SLF6-2	94.8	-
SLF13	atg1051	719671	371969-370767	Solanum tuberosum DM8.1, SLF13	98	F-box domain
SLF6-2	atg2585	25202	20346-19204	Solanum tuberosum DM8.1, SLF6	93.2	F-box domain
SLF6-3	hptg0038	1351273	535466-534324	Solanum tuberosum DM8.1, SLF6	93.2	F-box domain
SLF5-2Ψ	hptg0077	162479	55784-54613	Solanum tuberosum DM8.1, SLF5-2	97.5	-
SLF7Ψ	hptg0077	162479	154995-153833	Solanum tuberosum DM8.1, SLF7	95.6	-
S-RNase	hptg0110	2747417	433886-434119, 434206-434619	Solanum tuberosum MZ561415.1, SRNase-S12	95.1	Ribonuclease T2 family
SLF17	hptg0110	2747417	2317341-2318501	Solanum tuberosum DM8.1, SLF17	95.6	F-box domain
SLF6-4	hptg0194	1003670	508385-507240	Solanum tuberosum DM8.1, SLF6	97	F-box domain
SLF17-2	hptg0194	1003670	801653-800472	Solanum tuberosum DM8.1, SLF17	97.2	F-box domain
SLF22Ψ	hptg0234	1176391	211210-210058	Solanum tuberosum DM8.1, SLF22-2	97.7	-
S-RNase-2	hptg0234	1176391	1116073-1115837, 1115749-1115336	Solanum tuberosu XM_006347185.1, RNase1	98.2	Ribonuclease T2 family
SLF18-2	ptg0037	13723268	13580936-13582051	Solanum tuberosum DM8.1, SLF18	96.3	F-box domain
SLF19-2	ptg0037	13723268	13603309-13602194	Solanum tuberosum DM8.1, SLF19	95.6	F-box domain
SLF15	ptg0044	6186968	2676982-2678241	Solanum tuberosum DM8.1, SLF15	97	F-box domain
SLF16Ψ	ptg0044	6186968	3952147-3950967	Solanum tuberosum DM8.1, SLF16	98.4	-
SLF5-3	ptg0064	666358	351059-349875	Solanum tuberosum DM8.1, SLF5	97.2	F-box domain
SLF12-2	ptg0064	666358	377246-378412	Solanum tuberosum DM8.1, SLF12	98.5	F-box domain
SLF5-4Ψ	ptg0065	8065906	2847-1679	Solanum tuberosum DM8.1, SLF5-2	98	-
SLF7-2	ptg0065	8065906	60676-59513	Solanum tuberosum DM8.1, SLF7	95.5	F-box domain
SLF20Ψ	ptg0065	8065906	72300-71134	Solanum tuberosum DM8.1, SLF20	96.2	-
SLF9-2Ψ	ptg0065	8065906	1642956-1641816	Solanum tuberosum DM8.1, SLF9	97.5	-
SLF10-2Ψ	ptg0065	8065906	2435656-2434458	Solanum chilense KJ814888.1, SLF10	91.1	-
SLF6-5Ψ	ptg0065	8065906	4880661-4879520	Solanum tuberosum DM8.1, SLF6-2	95	-
SLF13-2	ptg0065	8065906	5420136-5418934	Solanum tuberosum DM8.1, SLF13	98	F-box domain

Downloads

The Solanum cajamarquense S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_cajamarquense

Publications

Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Genome evolution and diversity of wild and cultivated potatoes. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x.