Description

Solanum burkartii is a northern Peruvian species with a very small distribution. Plants 2.5 to 3 feet tall and occasionally much taller. Long, narrow leaves. Dark purple flowers. Conical fruits. Long stolons – 3 feet or more. Tubers whitish, large for a wild species – four to five inches long and an inch in diameter.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum burkartii

• Solanum burkartii PG4005

S genes

Solanum burkartii PG4005 S genes

Query	Contig	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF10Ψ	atg0017	702060	85604-84376	Solanum chilense KJ814888.1, SLF10	92.6	-
SLF19	atg0050	501658	477114-478229	Solanum tuberosum DM8.1, SLF19	95.7	F-box domain
SLF21	atg0077	1137985	93284-94504	Solanum tuberosum DM8.1, SLF21	96.2	F-box domain
SLF20	atg0077	1137985	478972-480138	Solanum tuberosum DM8.1, SLF20	96.7	F-box domain
SLF7	atg0077	1137985	495071-496240	Solanum tuberosum DM8.1, SLF7	97.4	F-box domain
SLF5	atg0077	1137985	534773-535942	Solanum tuberosum DM8.1, SLF5-2	98.4	F-box domain
SLF4Ψ	atg0077	1137985	684923-686078	Solanum pimpinellifolium KJ814871.1, SLF4	94.8	-
SLF12	atg0077	1137985	828812-827646	Solanum tuberosum DM8.1, SLF12	99.1	F-box domain
SLF5-2	atg0077	1137985	846353-847537	Solanum tuberosum DM8.1, SLF5	97.2	F-box domain
SLF18	atg0198	908837	18546-17434	Solanum tuberosum DM8.1, SLF18	95.7	F-box domain
SLF11Ψ	atg0317	853005	845006-846176	Solanum tuberosum DM8.1, SLF11	96.2	-
SLF9Ψ	atg0386	850239	633947-632804	Solanum tuberosum DM8.1, SLF9	97.6	-
SLF15	atg0619	201148	101238-99979	Solanum tuberosum DM8.1, SLF15	97.4	F-box domain
SLF18-2Ψ	atg0996	44892	9015-10133	Solanum tuberosum DM8.1, SLF18	95.8	-
S-RNase-1	atg1996	26036	8309-8545, 8633-9046	Solanum tuberosum XM_006347185.1, RNase1	97.5	Ribonuclease T2 family
S-RNase-2	hptg0018	3281053	2580906-2581142, 2581230-2581643	Solanum tuberosum XM_006347185.1, RNase1	97.5	Ribonuclease T2 family
SLF22	hptg0018	3281053	3014776-3015927	Solanum tuberosum DM8.1, SLF22-2	95.9	F-box domain
SLF6	hptg0043	689968	53790-52645	Solanum tuberosum DM8.1, SLF6	94.4	F-box domain
SLF17	hptg0043	689968	653041-651860	Solanum tuberosum DM8.1, SLF17	97.5	F-box domain
S-RNase-3	hptg0069	5605962	238691-238921, 239032-239445	Solanum tuberosum MZ561411.1, SRNase-S8	93.6	Ribonuclease T2 family
SLF10-2Ψ	hptg0069	5605962	776187-774960	Solanum chilense KJ814888.1, SLF10	90.4	-
SLF23	hptg0069	5605962	1140112-1141269	Solanum lycopersicoides KU960925.1, SLF23	96.0	F-box domain
SLF17-2	hptg0069	5605962	1171437-1172618	Solanum tuberosum DM8.1, SLF17	96.9	-
SLF4-2Ψ	hptg0069	5605962	2164559-2165727	Solanum pimpinellifolium KJ814871.1, SLF4	95.5	F-box domain
SLF12-2	hptg0069	5605962	2325433-2324267	Solanum tuberosum DM8.1, SLF12	98.3	F-box domain
SLF5-3	hptg0069	5605962	2407052-2408236	Solanum tuberosum DM8.1, SLF5	97.0	F-box domain
SLF5-4	hptg0069	5605962	2685376-2686545	Solanum tuberosum DM8.1, SLF5-2	98.5	F-box domain
SLF7-2	hptg0069	5605962	2706795-2705626	Solanum tuberosum DM8.1, SLF7	97.5	F-box domain
SLF20-2	hptg0069	5605962	2717865-2716699	Solanum tuberosum DM8.1, SLF20	96.6	F-box domain
SLF21-2	hptg0069	5605962	3096897-3095677	Solanum tuberosum DM8.1, SLF21	96.3	F-box domain
SLF9-2Ψ	hptg0069	5605962	4770649-4769521	Solanum tuberosum DM8.1, SLF9	96.0	-
SLF13	hptg0122	339057	189279-190481	Solanum tuberosum DM8.1, SLF13	98.3	F-box domain
SLF12-3Ψ	hptg0155	3071038	49549-48401	Solanum pennellii NM_001323464.1, SLF12	92.9	-
SLF11-2Ψ	hptg0155	3071038	2170009-2171179	Solanum tuberosum DM8.1, SLF11	96.1	-
SLF1Ψ	hptg0186	1423671	1199132-1200313	Solanum peruvianum KJ814846.1, SLF1	92.3	-
SLF1-2Ψ	hptg0244	200768	104268-103091	Solanum pennellii KJ814858.1, SLF1	91.2	-
SLF16Ψ	ptg0031	6686214	2907666-2908846	Solanum tuberosum DM8.1, SLF16	98.0	-
SLF15-2	ptg0031	6686214	4690285-4689026	Solanum tuberosum DM8.1, SLF15	97.4	F-box domain
SLF19-2	ptg0043	9137044	6203907-6205022	Solanum tuberosum DM8.1, SLF19	95.6	F-box domain
SLF18-3	ptg0043	9137044	6227459-6226347	Solanum tuberosum DM8.1, SLF18	95.4	F-box domain
SLF12-4Ψ	ptg0064	12297908	941953-943102	Solanum pennellii NM_001323464.1, SLF12	93.1	-
SLF13-2	ptg0064	12297908	1530756-1529554	Solanum tuberosum DM8.1, SLF13	98.2	F-box domain

Downloads

The Solanum burkartii S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_burkartii

Publications

Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Genome evolution and diversity of wild and cultivated potatoes. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x.