Solanum brevicaule
Overview
| Genus | Solanum |
| Species | brevicaule |
| Common Name | Wild potato |
| Abbreviation | S. brevicaule |
| Ploidy | Diploid (2x), tetraploid (4x), and hexaploid (6x) |
| Chromosome Number | x=12 |
| Genome Size | 740 Mb |
| Genome Assemblies | 1 |
| Cross Reference | NCBI taxon: 205532 |
Organism Image
Description
Solanum brevicaule is a tuberous perennial plant of the family Solanaceae. The species is native to South America (Argentina, Bolivia, and Peru). It is related to the potato, but unlike the potato which is tetraploid, it has several levels of ploidy: diploid, tetraploid, and hexaploid.
This species gives its name to the "Solanum brevicaule complex" which includes about twenty species of morphologically close wild potato species distributed between central Peru and northern Argentina, and are considered by some taxonomists to be the ancestors of the traditional varieties of potatoes grown in the Andean regions.
S genes
Solanum brevicaule PG5032 S genes
| Query | Contig | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF22Ψ | atg0140 | 1018212 | 133212-134351 | Solanum tuberosum DM8.1, SLF22 | 98.7 | - |
| SLF15 | atg0184 | 614915 | 281439-282701 | Solanum tuberosum DM8.1, SLF15 | 97.7 | F-box domain |
| SLF19 | atg0263 | 1808953 | 57397-58512 | Solanum tuberosum DM8.1, SLF19 | 96.9 | F-box domain |
| SLF18 | atg0263 | 1808953 | 89186-88071 | Solanum tuberosum DM8.1, SLF18 | 97.4 | F-box domain |
| SLF16Ψ | atg0398 | 234574 | 99618-100798 | Solanum tuberosum DM8.1, SLF16 | 98.3 | - |
| SLF13 | atg0414 | 953614 | 206470-205268 | Solanum tuberosum DM8.1, SLF13 | 99.3 | F-box domain |
| SLF21 | atg2110 | 29145 | 26372-27586 | Solanum tuberosum DM8.1, SLF21 | 94.2 | F-box domain |
| SLF9 | hptg0102 | 1361660 | 272138-270996 | Solanum tuberosum DM8.1, SLF9 | 97.7 | F-box domain |
| SLF20 | hptg0104 | 1693955 | 40226-41392 | Solanum tuberosum DM8.1, SLF20 | 97.1 | F-box domain |
| SLF7 | hptg0104 | 1693955 | 315183-316352 | Solanum tuberosum DM8.1, SLF7 | 94.2 | F-box domain |
| SLF5 | hptg0104 | 1693955 | 541873-543042 | Solanum tuberosum DM8.1, SLF5-2 | 97 | F-box domain |
| SLF4Ψ | hptg0104 | 1693955 | 623681-624834 | Solanum pimpinellifolium KJ814871.1, SLF4 | 93.5 | - |
| SLF12 | hptg0104 | 1693955 | 765647-764481 | Solanum tuberosum DM8.1, SLF12 | 97.7 | F-box domain |
| SLF5-2 | hptg0104 | 1693955 | 778444-779634 | Solanum tuberosum DM8.1, SLF5 | 95.8 | F-box domain |
| SLF21-2 | hptg0104 | 1693955 | 1374724-1373510 | Solanum tuberosum DM8.1, SLF21 | 94.2 | F-box domain |
| SLF21-3 | hptg0110 | 3956835 | 2081-3295 | Solanum tuberosum DM8.1, SLF21 | 94.2 | F-box domain |
| SLF9-2 | hptg0110 | 3956835 | 3529225-3528083 | Solanum tuberosum DM8.1, SLF9 | 98.3 | F-box domain |
| SLF6Ψ | hptg0231 | 2808873 | 2511316-2510174 | Solanum tuberosum DM8.1, SLF6-2 | 97.3 | - |
| S-RNase | hptg0329 | 649926 | 323232-323011,322885-322457 | Solanum chacoense AF176533.1, ScS12-RNase | 99.5 | Ribonuclease T2 family |
| SLF21-4 | hptg0343 | 392195 | 208887-210105 | Solanum tuberosum DM8.1, SLF21 | 98.7 | F-box domain |
| SLF17 | hptg0382 | 315662 | 243712-242546 | Solanum peruvianum KU960916.1, SLF17 | 92 | F-box domain |
| SLF23 | hptg0382 | 315662 | 314210-313053 | Solanum neorickii MG266233.1, SLF23 | 94.1 | F-box domain |
| SLF7-2 | hptg0591 | 148993 | 67071-65899 | Solanum tuberosum DM8.1, SLF7 | 94.1 | F-box domain |
| SLF19-2 | ptg0036 | 5647308 | 3214461-3215576 | Solanum tuberosum DM8.1, SLF19 | 97 | F-box domain |
| SLF18-2 | ptg0036 | 5647308 | 3255196-3254081 | Solanum tuberosum DM8.1, SLF18 | 97.7 | F-box domain |
| SLF6-2Ψ | ptg0059 | 9943603 | 906259-905140 | Solanum tuberosum DM8.1, SLF6-2 | 94.6 | - |
| SLF13-2 | ptg0059 | 9943603 | 1404802-1403600 | Solanum tuberosum DM8.1, SLF13 | 99.3 | F-box domain |
| SLF5-3 | ptg0070 | 1313004 | 165454-166623 | Solanum tuberosum DM8.1, SLF5-2 | 97.1 | F-box domain |
| SLF12-2 | ptg0070 | 1313004 | 468101-466935 | Solanum tuberosum DM8.1, SLF12 | 97.1 | F-box domain |
| SLF5-4 | ptg0070 | 1313004 | 477407-478597 | Solanum tuberosum DM8.1, SLF5 | 96 | F-box domain |
| SLF17-2 | ptg0070 | 1313004 | 983767-982601 | Solanum peruvianum KU960916.1, SLF17 | 91.6 | F-box domain |
| SLF23-2 | ptg0070 | 1313004 | 1105050-1103893 | Solanum neorickii MG266233.1, SLF23 | 94.5 | F-box domain |
| SLF22-2 | ptg0183 | 2171851 | 1303086-1301969 | Solanum tuberosum DM8.1, SLF22 | 96.8 | F-box domain |
| SLF15-2 | ptg0191 | 1091159 | 817007-818266 | Solanum tuberosum DM8.1, SLF15 | 97.7 | F-box domain |
| SLF16-2Ψ | ptg0201 | 774258 | 136899-138079 | Solanum tuberosum DM8.1, SLF16 | 97.6 | - |
Downloads
The Solanum brevicaule S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Solanum_brevicaule |
Publications
Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Genome evolution and diversity of wild and cultivated potatoes. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x.